◆◆◆RE_0235 detail◆◆◆

Code name	RE_0235
Locus	AT2G46510
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0520_third_0235_FRW1W2_5252
sequence	>RE_0235_1698bp ATGAATATGAGTGATTTAGGTTGGGATGATGAAGATAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTCTAATT CGAATCAGAATCTCTTTCTTGTTATGGGAACTGATGATACTCTGAATAAGAAGCTCTCTAGTCTCGTTGATTGGCCAAACTCGGAGAATTTCAGCTGGAA CTACGCTATTTTCTGGCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCGAGAGCCTAATGAGGAAGAGGAATCA AAAGTTGTTAGGTCTTATAATTTTAACAACATGGGGGCAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTGTTGCAGAAGCTTCATAGGTTGTTTG GTGGATCTGATGAAGACAATTATGCTTTGAGCTTAGAGAAAGTTACTGCTACTGAGATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGA AGGCGGTCCTGGGAGGTGTTATTCTTCAGGGAAACATGTGTGGCTCTCTGATGCAGTTAACTCTGAGTCTGACTATTGTTTCAGGTCTTTTATGGCGAAA TCTGCGGGAATCAGAACGATCGTTATGGTTCCTACTGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGTTAAGT CTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCAGTAATGGTGACTTCAAACACTAACATGACTGGAGGGATTCACAAGCTTTTCGGGCAGGATTT GAGTGGAGCTCACGCGTATCCTAAGAAGCTCGAAGTGAGAAGAAACTTGGATGAGAGATTCACTCCTCAAAGTTGGGAAGGCTATAATAACAATAAAGGT CCAACATTTGGTTACACACCTCAGAGGGATGATGTGAAAGTGCTAGAGAATGTGAATATGGTTGTAGATAATAACAATTACAAGACGCAGATTGAGTTTG CGGGATCATCAGTTGCTGCTTCTTCGAATCCATCTACAAACACTCAGCAAGAAAAATCAGAATCTTGTACAGAGAAAAGACCAGTGAGCTTGTTAGCAGG AGCAGGAATAGTTTCTGTTGTTGATGAGAAGAGACCGAGAAAGAGAGGGAGAAAGCCTGCAAACGGAAGAGAAGAGCCATTGAACCATGTGGAAGTTGAG AGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTACGCTTTACGATCAGTTGTTCCAAACATTTCTAAAATGGACAAGGCTTCTCTACTGGGAGACGCAA TTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATAATGGAAGATGAAAGAGTAGGAACAGATAAGAGCTTATCAGAATCAAACACAATAACAGTAGA AGAAAGTCCAGAAGTTGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAATCTCGCCTTTGGATTCACATCCAGCTTCAAGAATCATACAAGCA ATGAGAAACTCAAATGTTAGTCTAATGGAGGCTAAGTTATCATTAGCTGAAGACACAATGTTTCACACTTTTGTGATAAAGTCTAACAACGGGTCGGATC CATTGACGAAAGAGAAGCTTATAGCAGCGTTTTACCCCGAGACCAGCTCGACGCAACCGCCATTGCCTTCTTCTAGTTCACAGGTCTCTGGTGATATA >RE_0235_translated MNMSDLGWDDEDKSVVSAVLGHLASDFLRANSNSNQNLFLVMGTDDTLNKKLSSLVDWPNSENFSWNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEES KVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFFNHGEGGPGRCYSSGKHVWLSDAVNSESDYCFRSFMAK SAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQALFMRRVTQPVMVTSNTNMTGGIHKLFGQDLSGAHAYPKKLEVRRNLDERFTPQSWEGYNNNKG PTFGYTPQRDDVKVLENVNMVVDNNNYKTQIEFAGSSVAASSNPSTNTQQEKSESCTEKRPVSLLAGAGIVSVVDEKRPRKRGRKPANGREEPLNHVEVE RQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQA MRNSNVSLMEAKLSLAEDTMFHTFVIKSNNGSDPLTKEKLIAAFYPETSSTQPPLPSSSSQVSGDI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1696/1698 (99.9%)（アミノ酸配列で565/566 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G46 ATGAATATGAGTGATTTAGGTTGGGATGATGAAGATAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTCTAATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATGAATATGAGTGATTTAGGTTGGGATGATGAAGATAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTCTAATT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G46 CGAATCAGAATCTCTTTCTTGTTATGGGAACTGATGATACTCTGAATAAGAAGCTCTCTAGTCTCGTTGATTGGCCAAACTCGGAGAATTTCAGCTGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CGAATCAGAATCTCTTTCTTGTTATGGGAACTGATGATACTCTGAATAAGAAGCTCTCTAGTCTCGTTGATTGGCCAAACTCGGAGAATTTCAGCTGGAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G46 CTACGCTATTTTCTGGCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCGAGAGCCTAATGAGGAAGAGGAATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CTACGCTATTTTCTGGCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCGAGAGCCTAATGAGGAAGAGGAATCA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G46 AAAGTTGTTAGGTCTTATAATTTTAACAACATGGGGGCAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTGTTGCAGAAGCTTCATAGGTTGTTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AAAGTTGTTAGGTCTTATAATTTTAACAACATGGGGGCAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTGTTGCAGAAGCTTCATAGGTTGTTTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G46 GTGGATCTGATGAAGACAATTATGCTTTGAGCTTAGAGAAAGTTACTGCTACTGAGATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 GTGGATCTGATGAAGACAATTATGCTTTGAGCTTAGAGAAAGTTACTGCTACTGAGATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G46 AGGCGGTCCTGGGAGGTGTTATTCTTCAGGGAAACATGTGTGGCTCTCTGATGCAGTTAACTCTGAGTCTGACTATTGTTTCAGGTCTTTTATGGCGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AGGCGGTCCTGGGAGGTGTTATTCTTCAGGGAAACATGTGTGGCTCTCTGATGCAGTTAACTCTGAGTCTGACTATTGTTTCAGGTCTTTTATGGCGAAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G46 TCTGCGGGAATCAGAACGATCGTTATGGTTCCTACTGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGTTAAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 TCTGCGGGAATCAGAACGATCGTTATGGTTCCTACTGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGTTAAGT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G46 CTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCAGTAATGGTGACTTCAAACACTAACATGACTGGAGGGATTCACAAGCTTTTCGGGCAGGATTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCAGTAATGGTGACTTCAAACACTAACATGACTGGAGGGATTCACAAGCTTTTCGGGCAGGATTT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G46 GAGTGGAGCTCACGCGTATCCTAAGAAGCTCGAAGTGAGAAGAAACTTGGATGAGAGATTCACTCCTCAAAGTTGGGAAGGCTATAATAACAATAAAGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 GAGTGGAGCTCACGCGTATCCTAAGAAGCTCGAAGTGAGAAGAAACTTGGATGAGAGATTCACTCCTCAAAGTTGGGAAGGCTATAATAACAATAAAGGT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G46 CCAACATTTGGTTACACACCTCAGAGGGATGATGTGAAAGTGCTAGAGAATGTGAATATGGTTGTAGATAATAACAATTACAAGACGCAGATTGAGTTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CCAACATTTGGTTACACACCTCAGAGGGATGATGTGAAAGTGCTAGAGAATGTGAATATGGTTGTAGATAATAACAATTACAAGACGCAGATTGAGTTTG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G46 CGGGATCATCAGTTGCTGCTTCTTCGAATCCATCTACAAACACTCAGCAAGAAAAATCAGAATCTTGTACAGAGAAAAGACCAGTGAGCTTGTTAGCAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CGGGATCATCAGTTGCTGCTTCTTCGAATCCATCTACAAACACTCAGCAAGAAAAATCAGAATCTTGTACAGAGAAAAGACCAGTGAGCTTGTTAGCAGG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G46 AGCAGGAATAGTTTCTGTTGTTGATGAGAAGAGACCGAGAAAGAGAGGGAGAAAGCCTGCAAACGGAAGAGAAGAGCCATTGAACCATGTGGAAGCTGAG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: RE_023 AGCAGGAATAGTTTCTGTTGTTGATGAGAAGAGACCGAGAAAGAGAGGGAGAAAGCCTGCAAACGGAAGAGAAGAGCCATTGAACCATGTGGAAGTTGAG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G46 AGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTACGCTTTACGATCAGTTGTTCCAAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGAGACGCAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: RE_023 AGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTACGCTTTACGATCAGTTGTTCCAAACATTTCTAAAATGGACAAGGCTTCTCTACTGGGAGACGCAA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G46 TTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATAATGGAAGATGAAAGAGTAGGAACAGATAAGAGCTTATCAGAATCAAACACAATAACAGTAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 TTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATAATGGAAGATGAAAGAGTAGGAACAGATAAGAGCTTATCAGAATCAAACACAATAACAGTAGA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G46 AGAAAGTCCAGAAGTTGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAATCTCGCCTTTGGATTCACATCCAGCTTCAAGAATCATACAAGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AGAAAGTCCAGAAGTTGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAATCTCGCCTTTGGATTCACATCCAGCTTCAAGAATCATACAAGCA 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G46 ATGAGAAACTCAAATGTTAGTCTAATGGAGGCTAAGTTATCATTAGCTGAAGACACAATGTTTCACACTTTTGTGATAAAGTCTAACAACGGGTCGGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATGAGAAACTCAAATGTTAGTCTAATGGAGGCTAAGTTATCATTAGCTGAAGACACAATGTTTCACACTTTTGTGATAAAGTCTAACAACGGGTCGGATC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 AT2G46 CATTGACGAAAGAGAAGCTTATAGCAGCGTTTTACCCCGAGACCAGCTCGACGCAACCGCCATTGCCTTCTTCTAGTTCACAGGTCTCTGGTGATATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CATTGACGAAAGAGAAGCTTATAGCAGCGTTTTACCCCGAGACCAGCTCGACGCAACCGCCATTGCCTTCTTCTAGTTCACAGGTCTCTGGTGATATA 1610 1620 1630 1640 1650 1660 1670 1680 1690 10 20 30 40 50 60 70 80 90 100 AT2G46 MNMSDLGWDDEDKSVVSAVLGHLASDFLRANSNSNQNLFLVMGTDDTLNKKLSSLVDWPNSENFSWNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 MNMSDLGWDDEDKSVVSAVLGHLASDFLRANSNSNQNLFLVMGTDDTLNKKLSSLVDWPNSENFSWNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEES 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G46 KVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFFNHGEGGPGRCYSSGKHVWLSDAVNSESDYCFRSFMAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 KVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFFNHGEGGPGRCYSSGKHVWLSDAVNSESDYCFRSFMAK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G46 SAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQALFMRRVTQPVMVTSNTNMTGGIHKLFGQDLSGAHAYPKKLEVRRNLDERFTPQSWEGYNNNKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 SAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQALFMRRVTQPVMVTSNTNMTGGIHKLFGQDLSGAHAYPKKLEVRRNLDERFTPQSWEGYNNNKG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G46 PTFGYTPQRDDVKVLENVNMVVDNNNYKTQIEFAGSSVAASSNPSTNTQQEKSESCTEKRPVSLLAGAGIVSVVDEKRPRKRGRKPANGREEPLNHVEAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : RE_023 PTFGYTPQRDDVKVLENVNMVVDNNNYKTQIEFAGSSVAASSNPSTNTQQEKSESCTEKRPVSLLAGAGIVSVVDEKRPRKRGRKPANGREEPLNHVEVE 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G46 RQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 RQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 AT2G46 MRNSNVSLMEAKLSLAEDTMFHTFVIKSNNGSDPLTKEKLIAAFYPETSSTQPPLPSSSSQVSGDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 MRNSNVSLMEAKLSLAEDTMFHTFVIKSNNGSDPLTKEKLIAAFYPETSSTQPPLPSSSSQVSGDI 510 520 530 540 550 560

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