◆◆◆RE_0238 detail◆◆◆

Code name	RE_0238
Locus	AT3G07340
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.60%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0238_1368bp ATGGAGAACGAGCTGTTTATGAATGCAGGAGTTTCGCATCCGCCGGTGATGACGTCACCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGA CTCAGCCAGTGGATCCAAGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCTCTGAGCTCACTCGTCTCTTCTCC TACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTAGGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATCTAT GGAATTACGGCGAGCAATGGAAACTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAG AACTGTCCGGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAACAAACTCGCCGTTTCCGATTAA TAACGAACCACCCATCACAACCAATGAGAAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCCGGCGAATCGTCC GGTGAACTTTCCCGGAAAAGAAAAACTAAATCCAAGCAGAATTCTCCTTCTGCAGTTTCATCGTCAAAGGAGATTGAAGAGAAGGAAGATTCTGACCCAA AGAGATGCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACATTCATGTTAGAGCTCGACGAGGCCAAGCCACCGA TAGTCACAGTCTCGCCGAACGAGTTCGAAGAGAGAAAATAAGCGAAAGAATGAGGCTGCTTCAAGATCTTGTCCCTGGATGCAACAAGGTTACTGGAAAA GCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAACGACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACT TTAACATGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAACGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTT ATTGGGTGATCATCACAACAAAAATTTGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAACTAGAAGCTTCATT TCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGTATTCAACATTTTCCGAAGATGATTTACATAGCATTATTCATATGGGTTTTGCGC AAAACCGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAACTT >RE_0238_translated MENELFMNAGVSHPPVMTSPSSSSAMLKWVSMETQPVDPSLSRNLFWEKSTEQSIFDSALSSLVSSPTPSNSNFSVGGVGGENVIMRELIGKLGNIGDIY GITASNGNSCYATPMSSPPPGSMMETKTTTPMAELSGDPGFAERAARFSCFGSRSFNSRTNSPFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESS GELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMRLLQDLVPGCNKVTGK ALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNNLTHHQQVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFI SHLPTLAHFTDSISQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHMKAEL
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1364/1368 (99.7%)（アミノ酸配列で454/456 (99.6%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G07 ATGGAGAACGAGCTGTTTATGAATGCAGGAGTTTCGCATCCGCCGGTGATGACGTCACCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATGGAGAACGAGCTGTTTATGAATGCAGGAGTTTCGCATCCGCCGGTGATGACGTCACCGTCTTCTTCGTCGGCGATGCTTAAGTGGGTTTCAATGGAGA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G07 CTCAGCCAGTGGATCCAAGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCTCTGAGCTCACTCGTCTCTTCTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 CTCAGCCAGTGGATCCAAGTCTCAGTCGCAATCTGTTTTGGGAAAAGTCAACGGAACAGAGCATTTTTGATTCGGCTCTGAGCTCACTCGTCTCTTCTCC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G07 TACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTAGGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATCTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 TACGCCGTCAAATTCAAACTTTTCGGTTGGCGGAGTAGGTGGAGAAAATGTCATTATGAGAGAGCTCATCGGGAAACTGGGTAATATCGGCGATATCTAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G07 GGAATTACGGCGAGCAATGGAAACTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 GGAATTACGGCGAGCAATGGAAACTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTGGAAGTATGATGGAGACGAAAACGACGACGCCGATGGCAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G07 AACTGTCCGGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAACAAACTCGCCGTTTCCGATTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AACTGTCCGGCGACCCGGGATTCGCTGAGAGAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAACAAACTCGCCGTTTCCGATTAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G07 TAACGAACCACCCATCACAACCAATGAGAAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCCGGCGAATCGTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 TAACGAACCACCCATCACAACCAATGAGAAAATGCCACGTGTATCAAGCAGCCCAGTTTTTAAGCCTCTTGCGTCTCATGTTCCCGCCGGCGAATCGTCC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G07 GGTGAACTTTCCCGGAAAAGAAAAACTAAATCCAAGCAGAATTCTCCTTCTGCAGTTTCATCATCAAAGGAGATTGAAGAGAAGGAAGATTCTGATCCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: :::: RE_023 GGTGAACTTTCCCGGAAAAGAAAAACTAAATCCAAGCAGAATTCTCCTTCTGCAGTTTCATCGTCAAAGGAGATTGAAGAGAAGGAAGATTCTGACCCAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G07 AGAGATGCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACATTCATGTTAGAGCTCGACGAGGCCAAGCCACCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AGAGATGCAAAAAATCAGAAGAAAATGGAGACAAAACTAAATCAATTGATCCTTACAAAGATTACATTCATGTTAGAGCTCGACGAGGCCAAGCCACCGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G07 TAGTCACAGTCTCGCCGAACGAGTTCGAAGAGAGAAAATAAGCGAAAGAATGAAGCTGCTTCAAGATCTTGTCCCTGGATGCAACAAGGTTACTGGAAAA ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: RE_023 TAGTCACAGTCTCGCCGAACGAGTTCGAAGAGAGAAAATAAGCGAAAGAATGAGGCTGCTTCAAGATCTTGTCCCTGGATGCAACAAGGTTACTGGAAAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G07 GCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAACGACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 GCACTGATGTTGGATGAAATTATAAACTATGTCCAATCATTGCAACGACAAGTTGAGTTCTTGTCGATGAAGTTATCGTCAGTGAACACCAGGCTGGACT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G07 TTAACATGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAATGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_023 TTAACATGGACGCTCTCTTGTCTAAGGATATATTTCCTTCAAGCAACAATCTAACGCATCATCAACAAGTACTTCAATTAGATTCTTCAGCAGAAACGTT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G07 ATTGGGTGATCATCACAACAAAAATTTGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAACTAGAAGCTTCATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ATTGGGTGATCATCACAACAAAAATTTGCAATTGAACCCTGATATTTCTTCTAATAACGTAATAAACCCTTTGGAAACTTCTGAAACTAGAAGCTTCATT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G07 TCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGTATTCAACATTTTCCGAAGATGATTTACATAGCATTATTCATATGGGTTTTGCGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 TCTCACTTACCAACACTTGCTCATTTCACTGACTCTATTTCTCAGTATTCAACATTTTCCGAAGATGATTTACATAGCATTATTCATATGGGTTTTGCGC 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 AT3G07 AAAACCGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAACTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 AAAACCGTCTCCAAGAATTGAACCAAGGTTCATCAAACCAAGTACCATCGCACATGAAAGCTGAACTT 1310 1320 1330 1340 1350 1360 10 20 30 40 50 60 70 80 90 100 AT3G07 MENELFMNAGVSHPPVMTSPSSSSAMLKWVSMETQPVDPSLSRNLFWEKSTEQSIFDSALSSLVSSPTPSNSNFSVGGVGGENVIMRELIGKLGNIGDIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 MENELFMNAGVSHPPVMTSPSSSSAMLKWVSMETQPVDPSLSRNLFWEKSTEQSIFDSALSSLVSSPTPSNSNFSVGGVGGENVIMRELIGKLGNIGDIY 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G07 GITASNGNSCYATPMSSPPPGSMMETKTTTPMAELSGDPGFAERAARFSCFGSRSFNSRTNSPFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 GITASNGNSCYATPMSSPPPGSMMETKTTTPMAELSGDPGFAERAARFSCFGSRSFNSRTNSPFPINNEPPITTNEKMPRVSSSPVFKPLASHVPAGESS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G07 GELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: RE_023 GELSRKRKTKSKQNSPSAVSSSKEIEEKEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMRLLQDLVPGCNKVTGK 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G07 ALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNNLMHHQQVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFI ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: RE_023 ALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSNNLTHHQQVLQLDSSAETLLGDHHNKNLQLNPDISSNNVINPLETSETRSFI 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 AT3G07 SHLPTLAHFTDSISQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHMKAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_023 SHLPTLAHFTDSISQYSTFSEDDLHSIIHMGFAQNRLQELNQGSSNQVPSHMKAEL 410 420 430 440 450

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