◆◆◆RE_0242 detail◆◆◆

Code name	RE_0242
Locus	AT3G20640
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0420_アミノ酸配列100%一致
sequence	>RE_0242_1362bp ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTATCTTCTTCTTCTTCACCATCTTCTTCTTCTTCCATGAGAGCAAGCTCTATTG AATCTGGTGGTTCTGCTGTTTTCCATGATAAGCTTCATCATCATTCTTTAGCTACTGATCACCATCTTCAGATGATTGGTTTAGGACTTTCTTCACAATC ACCTGTTGATCAATGGAACCAATCTCTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTCAATTTAGATGCCACT TCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAGCTGCAAGAATCTGATTCCTCTCACCATCATCAAGCTTTGTGGCGAGATCCACAAA GCGATTTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGCGGGTTTTTCTTAGATCATCAGTTCAGTCCTCATGGTAGCTCAAGTACCGACAGTAGCAC AGTAACATGTCAAGGTTTCGCTGTTGACAACTCGTCAAACGCCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGTATGTTTCATCATCAG CAAGCAGGTGGTTTTGGCTCTTCTGATCAACAACCGTCGAGGAATCATCAACAGTCATCTCTTGGCTATTCTCAGTTTGGATCATCCACCGGAAACTATG ATCAAATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCGCCGCCAAAACCACACAGTCCTTTGAGATTCTCTAATAACGCAACGTTTTG GAACCCCGCGGCTGCGGGAAACGCCGGTGCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCGGCGTTACAACCGCCGCAGATTCATCCGCAGAGT TTTGACGAACAACCAAAGAATATATCGGAGATCAGAGATTCAAGTAGCAACGAAGTAAAGAGAGGAGGAAACGATCATCAGCCGGCGGCGAAAAGAGCTA AGAGCGAAGCAGCGTCTCCGTCACCAGCTTTCAAGAGGAAAGAGAAAATGGGGGACAGAATCGCTGCGCTCCAACAATTGGTTTCACCTTTCGGAAAGAC TGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAACAAGTTTCTGCTCTGAGCAACCCATACATGAAAAGTGGAGCTTCT TTACAACATCAACAGAGTGATCATTCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTATGCTTAGTGCCAGTTTCAAGCACAT TTCCAGTGACACACGATACTACAGTAGATTTCTGGACTCCTACATTTGGTGGGACTTTTAGA >RE_0242_translated MGDHHDFINSGSWWKVSSSSSPSSSSSMRASSIESGGSAVFHDKLHHHSLATDHHLQMIGLGLSSQSPVDQWNQSLLRGDSKAETSFGVMLQENLNLDAT SNANANTTSSTSSYQLQESDSSHHHQALWRDPQSDFKPQILTSGGNRGFFLDHQFSPHGSSSTDSSTVTCQGFAVDNSSNAMYAATTTTPNSSSGMFHHQ QAGGFGSSDQQPSRNHQQSSLGYSQFGSSTGNYDQMASALPSTWFLRSSPPPKPHSPLRFSNNATFWNPAAAGNAGAPPPHDASSNFFPALQPPQIHPQS FDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGAS LQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGGTFR
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1361/1362 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G20 ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTATCTTCTTCTTCTTCACCATCTTCTTCTTCTTCCATGAGAGCAAGCTCTATTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTATCTTCTTCTTCTTCACCATCTTCTTCTTCTTCCATGAGAGCAAGCTCTATTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G20 AATCTGGTGGTTCTGCTGTTTTCCATGATAAGCTTCATCATCATTCTTTAGCTACTGATCACCATCTTCAGATGATTGGTTTAGGACTTTCTTCACAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 AATCTGGTGGTTCTGCTGTTTTCCATGATAAGCTTCATCATCATTCTTTAGCTACTGATCACCATCTTCAGATGATTGGTTTAGGACTTTCTTCACAATC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G20 ACCTGTTGATCAATGGAACCAATCTCTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTCAATTTAGATGCCACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 ACCTGTTGATCAATGGAACCAATCTCTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTCAATTTAGATGCCACT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G20 TCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAGCTGCAAGAATCTGATTCCTCTCACCATCATCAAGCTTTGTGGCGAGATCCACAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 TCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAGCTGCAAGAATCTGATTCCTCTCACCATCATCAAGCTTTGTGGCGAGATCCACAAA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G20 GCGATTTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGCGGGTTTTTCTTAGATCATCAGTTCAGTCCTCATGGTAGCTCAAGTACCGACAGTAGCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 GCGATTTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGCGGGTTTTTCTTAGATCATCAGTTCAGTCCTCATGGTAGCTCAAGTACCGACAGTAGCAC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G20 AGTAACATGTCAAGGTTTCGCTGTTGACAACTCGTCAAACGCCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGTATGTTTCATCATCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 AGTAACATGTCAAGGTTTCGCTGTTGACAACTCGTCAAACGCCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGTATGTTTCATCATCAG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G20 CAAGCAGGTGGTTTTGGCTCTTCTGATCAACAACCGTCGAGGAATCATCAACAGTCATCTCTTGGCTATTCTCAGTTTGGATCATCCACCGGAAACTATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 CAAGCAGGTGGTTTTGGCTCTTCTGATCAACAACCGTCGAGGAATCATCAACAGTCATCTCTTGGCTATTCTCAGTTTGGATCATCCACCGGAAACTATG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G20 ATCAAATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCGCCGCCAAAACCACACAGTCCTTTGAGATTCTCTAATAACGCAACGTTTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 ATCAAATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCGCCGCCAAAACCACACAGTCCTTTGAGATTCTCTAATAACGCAACGTTTTG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G20 GAACCCCGCGGCTGCGGGAAACGCCGGTGCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCGGCGTTACAACCGCCGCAGATTCATCCGCAGAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 GAACCCCGCGGCTGCGGGAAACGCCGGTGCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCGGCGTTACAACCGCCGCAGATTCATCCGCAGAGT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G20 TTTGACGAACAACCAAAGAATATATCGGAGATTAGAGATTCAAGTAGCAACGAAGTAAAGAGAGGAGGAAACGATCATCAGCCGGCGGCGAAAAGAGCTA :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 TTTGACGAACAACCAAAGAATATATCGGAGATCAGAGATTCAAGTAGCAACGAAGTAAAGAGAGGAGGAAACGATCATCAGCCGGCGGCGAAAAGAGCTA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G20 AGAGCGAAGCAGCGTCTCCGTCACCAGCTTTCAAGAGGAAAGAGAAAATGGGGGACAGAATCGCTGCGCTCCAACAATTGGTTTCACCTTTCGGAAAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 AGAGCGAAGCAGCGTCTCCGTCACCAGCTTTCAAGAGGAAAGAGAAAATGGGGGACAGAATCGCTGCGCTCCAACAATTGGTTTCACCTTTCGGAAAGAC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G20 TGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAACAAGTTTCTGCTCTGAGCAACCCATACATGAAAAGTGGAGCTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 TGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAACAAGTTTCTGCTCTGAGCAACCCATACATGAAAAGTGGAGCTTCT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G20 TTACAACATCAACAGAGTGATCATTCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTATGCTTAGTGCCAGTTTCAAGCACAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 TTACAACATCAACAGAGTGATCATTCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTATGCTTAGTGCCAGTTTCAAGCACAT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 AT3G20 TTCCAGTGACACACGATACTACAGTAGATTTCTGGACTCCTACATTTGGTGGGACTTTTAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 TTCCAGTGACACACGATACTACAGTAGATTTCTGGACTCCTACATTTGGTGGGACTTTTAGA 1310 1320 1330 1340 1350 1360 10 20 30 40 50 60 70 80 90 100 AT3G20 MGDHHDFINSGSWWKVSSSSSPSSSSSMRASSIESGGSAVFHDKLHHHSLATDHHLQMIGLGLSSQSPVDQWNQSLLRGDSKAETSFGVMLQENLNLDAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 MGDHHDFINSGSWWKVSSSSSPSSSSSMRASSIESGGSAVFHDKLHHHSLATDHHLQMIGLGLSSQSPVDQWNQSLLRGDSKAETSFGVMLQENLNLDAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G20 SNANANTTSSTSSYQLQESDSSHHHQALWRDPQSDFKPQILTSGGNRGFFLDHQFSPHGSSSTDSSTVTCQGFAVDNSSNAMYAATTTTPNSSSGMFHHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 SNANANTTSSTSSYQLQESDSSHHHQALWRDPQSDFKPQILTSGGNRGFFLDHQFSPHGSSSTDSSTVTCQGFAVDNSSNAMYAATTTTPNSSSGMFHHQ 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G20 QAGGFGSSDQQPSRNHQQSSLGYSQFGSSTGNYDQMASALPSTWFLRSSPPPKPHSPLRFSNNATFWNPAAAGNAGAPPPHDASSNFFPALQPPQIHPQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 QAGGFGSSDQQPSRNHQQSSLGYSQFGSSTGNYDQMASALPSTWFLRSSPPPKPHSPLRFSNNATFWNPAAAGNAGAPPPHDASSNFFPALQPPQIHPQS 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G20 FDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 FDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGAS 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 AT3G20 LQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGGTFR :::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_024 LQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFGGTFR 410 420 430 440 450

このページのTOPに戻る