◆◆◆RE_0255 detail◆◆◆

Code name	RE_0255
Locus	AT3G57800
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列88.70%一致
comment	0318_アミノ酸配列70%以上一致
sequence	>RE_0255_1137bp ATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAACCAATAGGCCTTGAATCGCTACATCTCGGTGACGAATTTCGGC AACTAGTGACGACTTTACCTCCCGAGAACCCCGGCGGTTCGTTCACGGCTTTGCTTGAGCTTCCACCTACACAAGCAGTGGAGCTTCTCCATTTCACTGA TTCTTCGTCTTCTCAACAAGCGGCAGTGACAGGGATCGGTGGAGAGATTCCTCCGCCGCTTCACTCTTTCGGTGGGACATTGGCTTTTCCTTCTAACTCA GTTCTCATGGAGCGAGCAGCTCGTTTCTCGGTGATTGCCACTGAGCAACAAAACGGAAATATCTCCGGGGAGACTCCGACGAGCTCTGTACCTTCCAATT CAAGTGCTAATCTCGACAGAGTCAAGACGGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCGATTGAGAATCAAATCCCTTGCCC TAACCAGAACAATCGAAATGGGAAGAGGAAAGATTTCGAAAAGAAGGGTAAAAGCTCGACGAAGAAGAACAAAAGCTCTGAAGAGAACGAGAAGCTGCCA TATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGTTAC AGGAACTGGTCCCAGGCTGTGATAAGATTCAAGGTACCGCGCCGGTGCTGGATGAAATCATTAACCATGTCCAGTCATTACAACGTCAAGTGGAGATGCT ATCAATGAGACTCGCTGCGGTAAACCCCAGAATCGACTTCAATCTCGACACCATATTGGCTTCAGAAAACGGTTCTTTAATGGATGGGAGCTTCAATGCC GCACCAATGCAGCTTGCTTGGCCTCAGCAAGCCATTGAGACCGAACAGTCCTTTCATCACCGGCAACTGCAACAACCACCAACACAACAATGGCCTTTTG ACGGCTTGAACCAGCCGGTATGGGGAAGAGAAGAGGATCAAGCTCATGGCAATGATAACAGCAATTTGATGGCAGTTTCTGAAAATGTAATGGTGGCTTC TGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTG >RE_0255_translated MDLTGGFGARSGGVGPCREPIGLESLHLGDEFRQLVTTLPPENPGGSFTALLELPPTQAVELLHFTDSSSSQQAAVTGIGGEIPPPLHSFGGTLAFPSNS VLMERAARFSVIATEQQNGNISGETPTSSVPSNSSANLDRVKTEPAETDSSQRLISDSAIENQIPCPNQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLP YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTAPVLDEIINHVQSLQRQVEMLSMRLAAVNPRIDFNLDTILASENGSLMDGSFNA APMQLAWPQQAIETEQSFHHRQLQQPPTQQWPFDGLNQPVWGREEDQAHGNDNSNLMAVSENVMVASANLHPNQVKMEL
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1135/1278 (88.8%)（アミノ酸配列で378/426 (88.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G57 ATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAACCAATAGGCCTTGAATCGCTACATCTCGGTGACGAATTTCGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 ATGGATCTGACTGGAGGATTTGGAGCTAGATCCGGCGGTGTTGGACCGTGCCGGGAACCAATAGGCCTTGAATCGCTACATCTCGGTGACGAATTTCGGC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G57 AACTAGTGACGACTTTACCTCCCGAGAACCCCGGCGGTTCGTTCACGGCTTTGCTTGAGCTTCCACCTACACAAGCAGTGGAGCTTCTCCATTTCACTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 AACTAGTGACGACTTTACCTCCCGAGAACCCCGGCGGTTCGTTCACGGCTTTGCTTGAGCTTCCACCTACACAAGCAGTGGAGCTTCTCCATTTCACTGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G57 TTCTTCGTCTTCTCAACAAGCGGCAGTGACAGGGATCGGTGGAGAGATTCCTCCGCCGCTTCACTCTTTCGGTGGGACATTGGCTTTTCCTTCTAACTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 TTCTTCGTCTTCTCAACAAGCGGCAGTGACAGGGATCGGTGGAGAGATTCCTCCGCCGCTTCACTCTTTCGGTGGGACATTGGCTTTTCCTTCTAACTCA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G57 GTTCTCATGGAGCGAGCAGCTCGTTTCTCGGTGATTGCCACTGAGCAACAAAACGGAAATATCTCCGGGGAGACTCCGACGAGCTCTGTACCTTCCAATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 GTTCTCATGGAGCGAGCAGCTCGTTTCTCGGTGATTGCCACTGAGCAACAAAACGGAAATATCTCCGGGGAGACTCCGACGAGCTCTGTACCTTCCAATT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G57 CAAGTGCTAATCTCGACAGAGTCAAGACGGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCGATTGAGAATCAAATCCCTTGCCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 CAAGTGCTAATCTCGACAGAGTCAAGACGGAGCCTGCTGAGACCGATTCATCTCAGCGGTTGATTTCTGATTCAGCGATTGAGAATCAAATCCCTTGCCC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G57 TAACCAGAACAATCGAAATGGGAAGAGGAAAGATTTCGAAAAGAAGGGTAAAAGCTCGACGAAGAAGAACAAAAGCTCTGAAGAGAACGAGAAGCTGCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 TAACCAGAACAATCGAAATGGGAAGAGGAAAGATTTCGAAAAGAAGGGTAAAAGCTCGACGAAGAAGAACAAAAGCTCTGAAGAGAACGAGAAGCTGCCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G57 TATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGTTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 TATGTTCACGTTAGAGCTCGTCGTGGTCAAGCAACCGATAGCCATAGCTTAGCAGAACGAGCAAGAAGAGAGAAGATAAATGCACGAATGAAGCTGTTAC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G57 AGGAACTGGTCCCAGGCTGTGATAAGGGGACAGATTTTGGTGGAAAGATCAAGATCAAAGTGTGTTTTGGGGTCCATCTTTTGATGATAAGTGGGAAAAA ::::::::::::::::::::::::: RE_025 AGGAACTGGTCCCAGGCTGTGATAA--------------------------------------------------------------------------- 710 720 810 820 830 840 850 860 870 880 890 900 AT3G57 AGTTGCAATCTTTCTATGGAAGGTGAGCTGTGAGGACTTGATTGATTGTTCCTTTAGCCCCCCTAGGATTCAAGGTACCGCGCTGGTGCTGGATGAAATC ::::::::::::::::: :::::::::::::::: RE_025 ------------------------------------------------------------------GATTCAAGGTACCGCGCCGGTGCTGGATGAAATC 730 740 750 910 920 930 940 950 960 970 980 990 1000 AT3G57 ATTAACCATGTCCAGTCATTACAACGTCAAGTGGAGATGCTATCAATGAGACTTGCTGCGGTAAACCCCAGAATCGACTTCAATCTCGACACCATATTGG ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: RE_025 ATTAACCATGTCCAGTCATTACAACGTCAAGTGGAGATGCTATCAATGAGACTCGCTGCGGTAAACCCCAGAATCGACTTCAATCTCGACACCATATTGG 760 770 780 790 800 810 820 830 840 850 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G57 CTTCAGAAAACGGTTCTTTAATGGATGGGAGCTTCAATGCCGCACCAATGCAGCTTGCTTGGCCTCAGCAAGCCATTGAGACCGAACAGTCCTTTCATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 CTTCAGAAAACGGTTCTTTAATGGATGGGAGCTTCAATGCCGCACCAATGCAGCTTGCTTGGCCTCAGCAAGCCATTGAGACCGAACAGTCCTTTCATCA 860 870 880 890 900 910 920 930 940 950 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G57 CCGGCAACTGCAACAACCACCAACACAACAATGGCCTTTTGACGGCTTGAACCAGCCGGTATGGGGAAGAGAAGAGGATCAAGCTCATGGCAATGATAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 CCGGCAACTGCAACAACCACCAACACAACAATGGCCTTTTGACGGCTTGAACCAGCCGGTATGGGGAAGAGAAGAGGATCAAGCTCATGGCAATGATAAC 960 970 980 990 1000 1010 1020 1030 1040 1050 1210 1220 1230 1240 1250 1260 1270 AT3G57 AGCAATTTGATGGCAGTTTCTGAAAATGTAATGGTGGCTTCTGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 AGCAATTTGATGGCAGTTTCTGAAAATGTAATGGTGGCTTCTGCTAATTTGCACCCAAATCAGGTCAAAATGGAGCTG 1060 1070 1080 1090 1100 1110 1120 1130 10 20 30 40 50 60 70 80 90 100 AT3G57 MDLTGGFGARSGGVGPCREPIGLESLHLGDEFRQLVTTLPPENPGGSFTALLELPPTQAVELLHFTDSSSSQQAAVTGIGGEIPPPLHSFGGTLAFPSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 MDLTGGFGARSGGVGPCREPIGLESLHLGDEFRQLVTTLPPENPGGSFTALLELPPTQAVELLHFTDSSSSQQAAVTGIGGEIPPPLHSFGGTLAFPSNS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G57 VLMERAARFSVIATEQQNGNISGETPTSSVPSNSSANLDRVKTEPAETDSSQRLISDSAIENQIPCPNQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 VLMERAARFSVIATEQQNGNISGETPTSSVPSNSSANLDRVKTEPAETDSSQRLISDSAIENQIPCPNQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLP 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G57 YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFGVHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEI :::::::::::::::::::::::::::::::::::::::::: ::::: ::::: RE_025 YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDK-----------------------------------------------IQGTAPVLDEI 210 220 230 240 250 310 320 330 340 350 360 370 380 390 400 AT3G57 INHVQSLQRQVEMLSMRLAAVNPRIDFNLDTILASENGSLMDGSFNAAPMQLAWPQQAIETEQSFHHRQLQQPPTQQWPFDGLNQPVWGREEDQAHGNDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 INHVQSLQRQVEMLSMRLAAVNPRIDFNLDTILASENGSLMDGSFNAAPMQLAWPQQAIETEQSFHHRQLQQPPTQQWPFDGLNQPVWGREEDQAHGNDN 260 270 280 290 300 310 320 330 340 350 410 420 AT3G57 SNLMAVSENVMVASANLHPNQVKMEL :::::::::::::::::::::::::: RE_025 SNLMAVSENVMVASANLHPNQVKMEL 360 370

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