◆◆◆RE_0256 detail◆◆◆

Code name	RE_0256
Locus	AT3G61950
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列85.80%一致
comment	0420_アミノ酸配列70%以上一致
sequence	>RE_0256_921bp ATGCTGCAAAGTGAAGACCCCTCATCGTTTTTTTCAATCAAAGAGCCAAACTTTCTGACGCTACTGTCTCTTCAAACCCTCAAGGAGCCTTGGGAACTCG AAAGATATCTTTCACTTGAGGATTCACAATTTCATTCACCGGTCCAATCTGAGACCAACCGCTTCATGGAAGGAGCCAATCAAGCTGTGTCAAGCCAAGA AATTCCCTTTAGCCAAGCAAACATGACACTCCCTTCTTCTACCTCATCACCACTCAGTGCACATTCAAGACGAAAGCGCAAAATCAACCACTTGCTGCCT CAAGAAATGACTAGAGAAAAGAGAAAGAGGAGGAAAACAAAACCAAGTAAAAACAATGAAGAGATTGAGAATCAAAGAATAAACCACATTGCTGTTGAAC GAAACAGAAGACGTCAAATGAACGAACATATCAACTCTCTCCGGGCCCTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGG AGCAATAAACTACGTGAAGGTCCTCGAGCAAATCATACAATCTCTCGAATCGCAAAAGAGAACGCAACAACAAAGTAACAGTGAGGTAGTAGAAAACGCA CTTAATCATCTCTCAGGCATTTCGTCGAACGACCTGTGGACAACTCTTGAAGATCAAACTTGTATCCCCAAAATCGAAGCTACAGTGATACAAAACCATG TCAGCCTTAAAGTTCAATGTGAGAAGAAACAAGGACAACTTCTCAAAGGAATCATATCACTTGAAAAGCTTAAACTCACTGTTCTTCATCTCAATATCAC TACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGGAAGATGAGTGCGACTTAGAGTCAGCCGACGAGATTACGGCGGCTGTTCATCGG ATTTTCGATATTCCGACAATT >RE_0256_translated MLQSEDPSSFFSIKEPNFLTLLSLQTLKEPWELERYLSLEDSQFHSPVQSETNRFMEGANQAVSSQEIPFSQANMTLPSSTSSPLSAHSRRKRKINHLLP QEMTREKRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLEQIIQSLESQKRTQQQSNSEVVENA LNHLSGISSNDLWTTLEDQTCIPKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVSYSFNLKMEDECDLESADEITAAVHR IFDIPTI
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 921/1074 (85.8%)（アミノ酸配列で307/358 (85.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G61 ATGGAAAGGTTTCAAGGACACATCAACCCCTGTTTCTTCGATCGAAAACCGGATGTGAGAAGCCTCGAGGTTCAAGGATTTGCAGAGGCTCAAAGCTTTG RE_025 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT3G61 CTTTCAAAGAAAAAGAGGAAGAAAGCTTACAAGATACAGTTCCATTTCTACAGATGCTGCAAAGTGAAGACCCCTCATCGTTTTTTTCAATCAAAGAGCC ::::::::::::::::::::::::::::::::::::::::::::::: RE_025 -----------------------------------------------------ATGCTGCAAAGTGAAGACCCCTCATCGTTTTTTTCAATCAAAGAGCC 10 20 30 40 210 220 230 240 250 260 270 280 290 300 AT3G61 AAACTTTCTGACGCTACTGTCTCTTCAAACCCTCAAGGAGCCTTGGGAACTCGAAAGATATCTTTCACTTGAGGATTCACAATTTCATTCACCGGTCCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 AAACTTTCTGACGCTACTGTCTCTTCAAACCCTCAAGGAGCCTTGGGAACTCGAAAGATATCTTTCACTTGAGGATTCACAATTTCATTCACCGGTCCAA 50 60 70 80 90 100 110 120 130 140 310 320 330 340 350 360 370 380 390 400 AT3G61 TCTGAGACCAACCGCTTCATGGAAGGAGCCAATCAAGCTGTGTCAAGCCAAGAAATTCCCTTTAGCCAAGCAAACATGACACTCCCTTCTTCTACCTCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 TCTGAGACCAACCGCTTCATGGAAGGAGCCAATCAAGCTGTGTCAAGCCAAGAAATTCCCTTTAGCCAAGCAAACATGACACTCCCTTCTTCTACCTCAT 150 160 170 180 190 200 210 220 230 240 410 420 430 440 450 460 470 480 490 500 AT3G61 CACCACTCAGTGCACATTCAAGACGAAAGCGCAAAATCAACCACTTGCTGCCTCAAGAAATGACTAGAGAAAAGAGAAAGAGGAGGAAAACAAAACCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 CACCACTCAGTGCACATTCAAGACGAAAGCGCAAAATCAACCACTTGCTGCCTCAAGAAATGACTAGAGAAAAGAGAAAGAGGAGGAAAACAAAACCAAG 250 260 270 280 290 300 310 320 330 340 510 520 530 540 550 560 570 580 590 600 AT3G61 TAAAAACAATGAAGAGATTGAGAATCAAAGAATAAACCACATTGCTGTTGAACGAAACAGAAGACGTCAAATGAACGAACATATCAACTCTCTCCGGGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 TAAAAACAATGAAGAGATTGAGAATCAAAGAATAAACCACATTGCTGTTGAACGAAACAGAAGACGTCAAATGAACGAACATATCAACTCTCTCCGGGCC 350 360 370 380 390 400 410 420 430 440 610 620 630 640 650 660 670 680 690 700 AT3G61 CTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGGAGCAATAAACTACGTGAAGGTCCTCGAGCAAATCATACAATCTCTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 CTTCTCCCACCTTCCTACATCCAACGAGGAGACCAAGCTTCCATAGTAGGAGGAGCAATAAACTACGTGAAGGTCCTCGAGCAAATCATACAATCTCTCG 450 460 470 480 490 500 510 520 530 540 710 720 730 740 750 760 770 780 790 800 AT3G61 AATCGCAAAAGAGAACGCAACAACAAAGTAACAGTGAGGTAGTAGAAAACGCACTTAATCATCTCTCAGGCATTTCGTCGAACGACCTGTGGACAACTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 AATCGCAAAAGAGAACGCAACAACAAAGTAACAGTGAGGTAGTAGAAAACGCACTTAATCATCTCTCAGGCATTTCGTCGAACGACCTGTGGACAACTCT 550 560 570 580 590 600 610 620 630 640 810 820 830 840 850 860 870 880 890 900 AT3G61 TGAAGATCAAACTTGTATCCCCAAAATCGAAGCTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTGAGAAGAAACAAGGACAACTTCTCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 TGAAGATCAAACTTGTATCCCCAAAATCGAAGCTACAGTGATACAAAACCATGTCAGCCTTAAAGTTCAATGTGAGAAGAAACAAGGACAACTTCTCAAA 650 660 670 680 690 700 710 720 730 740 910 920 930 940 950 960 970 980 990 1000 AT3G61 GGAATCATATCACTTGAAAAGCTTAAACTCACTGTTCTTCATCTCAATATCACTACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 GGAATCATATCACTTGAAAAGCTTAAACTCACTGTTCTTCATCTCAATATCACTACTTCGTCTCATTCCTCTGTTTCTTATTCCTTCAACCTCAAGATGG 750 760 770 780 790 800 810 820 830 840 1010 1020 1030 1040 1050 1060 1070 AT3G61 AAGATGAGTGCGACTTAGAGTCAGCCGACGAGATTACGGCGGCTGTTCATCGGATTTTCGATATTCCGACAATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 AAGATGAGTGCGACTTAGAGTCAGCCGACGAGATTACGGCGGCTGTTCATCGGATTTTCGATATTCCGACAATT 850 860 870 880 890 900 910 920 10 20 30 40 50 60 70 80 90 100 AT3G61 MERFQGHINPCFFDRKPDVRSLEVQGFAEAQSFAFKEKEEESLQDTVPFLQMLQSEDPSSFFSIKEPNFLTLLSLQTLKEPWELERYLSLEDSQFHSPVQ ::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 ---------------------------------------------------MLQSEDPSSFFSIKEPNFLTLLSLQTLKEPWELERYLSLEDSQFHSPVQ 10 20 30 40 110 120 130 140 150 160 170 180 190 200 AT3G61 SETNRFMEGANQAVSSQEIPFSQANMTLPSSTSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 SETNRFMEGANQAVSSQEIPFSQANMTLPSSTSSPLSAHSRRKRKINHLLPQEMTREKRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRA 50 60 70 80 90 100 110 120 130 140 210 220 230 240 250 260 270 280 290 300 AT3G61 LLPPSYIQRGDQASIVGGAINYVKVLEQIIQSLESQKRTQQQSNSEVVENALNHLSGISSNDLWTTLEDQTCIPKIEATVIQNHVSLKVQCEKKQGQLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 LLPPSYIQRGDQASIVGGAINYVKVLEQIIQSLESQKRTQQQSNSEVVENALNHLSGISSNDLWTTLEDQTCIPKIEATVIQNHVSLKVQCEKKQGQLLK 150 160 170 180 190 200 210 220 230 240 310 320 330 340 350 AT3G61 GIISLEKLKLTVLHLNITTSSHSSVSYSFNLKMEDECDLESADEITAAVHRIFDIPTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_025 GIISLEKLKLTVLHLNITTSSHSSVSYSFNLKMEDECDLESADEITAAVHRIFDIPTI 250 260 270 280 290 300

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