◆◆◆RE_0266 detail◆◆◆

Code name	RE_0266
Locus	AT4G17880
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0266_1767bp ATGTCTCCGACGAATGTTCAAGTAACCGATTACCATCTCAACCAATCAAAAACGGATACAACAAATCTCTGGTCAACCGACGACGATGCATCGGTAATGG AAGCTTTCATCGGCGGCGGCTCCGATCATTCTTCTCTTTTTCCTCCACTTCCTCCTCCTCCTCTTCCTCAAGTCAACGAAGATAATCTCCAGCAACGTCT CCAAGCTTTAATCGAAGGAGCAAACGAGAACTGGACTTACGCCGTGTTCTGGCAATCATCTCACGGTTTCGCCGGAGAAGACAACAACAACAACAACACA GTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAGCCTAGAAAGAAGAAATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTA AGAGAGTGATTAGAGAGCTCAACTCTTTAATCTCCGGTGGTGTAGGAGGAGGAGATGAAGCTGGAGATGAAGAAGTTACAGATACTGAATGGTTCTTCTT AGTTTCAATGACACAGAGCTTTGTCAAGGGTACTGGTTTACCTGGTCAAGCTTTCTCAAATTCAGACACGATTTGGTTATCTGGTTCTAATGCTTTAGCT GGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAAACAATGGTGTGTGTAGCGACAGAGAATGGTGTCGTTGAGCTTGGTTCGTCGG AGACTATTCATCAAAGTTCAGATCTTGTTGATAAAGTTGACACCTTTTTCAATTTTAACAATGGTGGTGGTGAATTTGGTTCTTGGGCGTTTAATTTGAA TCCAGATCAAGGAGAGAATGATCCAGGTTTGTGGATTAGTGAACCTAATGGTGTTGACTCTGGTCTTGTAGCTGCTCCGGTGATGAATAATGGTGGAAAT GACTCAACTTCTAATTCTGATTCTCAACCAATTTCTAAGCTTTGTAATGGAAGCTCTGTTGAAAACCCTAACCCTAAAGTTCTGAAATCTTGTGAAATGG TGAATTTCAAGAATGGGATTGAGAATGGTCAAGAAGAAGATAGTAGTAATAAGAAGAGATCACCGGTTTCGAATAATGAAGAAGGGATGCTTTCTTTTAC CTCTGTTCTTCCATGTGACTCGAATCACTCTGATCTTGAAGCTTCAGTGGCTAAAGAAGCTGAGAGTAACAGAGTTGTGGTTGAACCGGAGAAGAAACCG AGGAAACGAGGGAGAAAACCGGCGAATGGAAGAGAAGAGCCTTTGAATCATGTAGAGGCAGAGAGACAGAGAAGAGAGAAGTTGAATCAGAGATTCTATT CTTTAAGAGCTGTGGTTCCTAATGTGTCTAAGATGGATAAAGCTTCTCTATTAGGAGATGCTATTTCGTATATCAGTGAGCTTAAGTCTAAGTTGCAAAA GGCTGAATCTGATAAAGAAGAGTTGCAGAAGCAGATTGATGTGATGAATAAAGAAGCGGGAAATGCGAAAAGTTCGGTAAAAGATCGAAAATGTTTGAAT CAAGAATCGAGTGTGTTGATAGAGATGGAGGTTGATGTGAAGGTTATTGGTTGGGATGCAATGATAAGGATTCAATGTAGTAAGAGGAATCATCCTGGTG CTAAGTTCATGGAAGCACTTAAGGAGTTGGATTTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTTATGATCCAACAAGCGACTGTGAAAAT GGGGAATCAGTTTTTCACGCAAGATCAACTCAAGGTTGCTCTAACGGAGAAAGTTGGAGAATGTCCA >RE_0266_translated MSPTNVQVTDYHLNQSKTDTTNLWSTDDDASVMEAFIGGGSDHSSLFPPLPPPPLPQVNEDNLQQRLQALIEGANENWTYAVFWQSSHGFAGEDNNNNNT VLLGWGDGYYKGEEEKPRKKKSNPASAAEQEHRKRVIRELNSLISGGVGGGDEAGDEEVTDTEWFFLVSMTQSFVKGTGLPGQAFSNSDTIWLSGSNALA GSSCERARQGQIYGLQTMVCVATENGVVELGSSETIHQSSDLVDKVDTFFNFNNGGGEFGSWAFNLNPDQGENDPGLWISEPNGVDSGLVAAPVMNNGGN DSTSNSDSQPISKLCNGSSVENPNPKVLKSCEMVNFKNGIENGQEEDSSNKKRSPVSNNEEGMLSFTSVLPCDSNHSDLEASVAKEAESNRVVVEPEKKP RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKEAGNAKSSVKDRKCLN QESSVLIEMEVDVKVIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVALTEKVGECP
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1764/1767 (99.8%)（アミノ酸配列で586/589 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G17 ATGTCTCCGACGAATGTTCAAGTAACCGATTACCATCTCAACCAATCAAAAACGGATACAACAAATCTCTGGTCAACCGACGACGATGCATCGGTAATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 ATGTCTCCGACGAATGTTCAAGTAACCGATTACCATCTCAACCAATCAAAAACGGATACAACAAATCTCTGGTCAACCGACGACGATGCATCGGTAATGG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G17 AAGCTTTCATCGGCGGCGGCTCCGATCATTCTTCTCTTTTTCCTCCACTTCCTCCTCCTCCTCTTCCTCAAGTCAACGAAGATAATCTCCAGCAACGTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 AAGCTTTCATCGGCGGCGGCTCCGATCATTCTTCTCTTTTTCCTCCACTTCCTCCTCCTCCTCTTCCTCAAGTCAACGAAGATAATCTCCAGCAACGTCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G17 CCAAGCTTTAATCGAAGGAGCAAACGAGAACTGGACTTACGCCGTGTTCTGGCAATCATCTCACGGTTTCGCCGGAGAAGACAACAACAACAACAACACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 CCAAGCTTTAATCGAAGGAGCAAACGAGAACTGGACTTACGCCGTGTTCTGGCAATCATCTCACGGTTTCGCCGGAGAAGACAACAACAACAACAACACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G17 GTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAGTCTAGAAAGAAGAAATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTA :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 GTGTTGTTAGGTTGGGGAGATGGTTATTACAAAGGAGAAGAAGAGAAGCCTAGAAAGAAGAAATCAAATCCAGCTAGTGCAGCTGAACAAGAGCATCGTA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G17 AGAGAGTGATTAGAGAGCTCAACTCTTTAATCTCCGGTGGTGTAGGAGGAGGAGATGAAGCTGGAGATGAAGAAGTTACAGATACTGAATGGTTCTTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 AGAGAGTGATTAGAGAGCTCAACTCTTTAATCTCCGGTGGTGTAGGAGGAGGAGATGAAGCTGGAGATGAAGAAGTTACAGATACTGAATGGTTCTTCTT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G17 AGTTTCAATGACACAGAGCTTTGTCAAGGGTACTGGTTTACCTGGTCAAGCTTTCTCAAATTCAGACACGATTTGGTTATCTGGTTCTAATGCTTTAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 AGTTTCAATGACACAGAGCTTTGTCAAGGGTACTGGTTTACCTGGTCAAGCTTTCTCAAATTCAGACACGATTTGGTTATCTGGTTCTAATGCTTTAGCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G17 GGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAAACAATGGTGTGTGTAGCGACAGAGAATGGTGTCGTTGAGCTTGGTTCGTCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 GGATCAAGTTGTGAGAGAGCTCGTCAAGGTCAGATTTATGGGTTACAAACAATGGTGTGTGTAGCGACAGAGAATGGTGTCGTTGAGCTTGGTTCGTCGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G17 AGATTATTCATCAAAGTTCAGATCTTGTTGATAAAGTTGACACCTTTTTCAATTTTAACAATGGTGGTGGTGAATTTGGTTCTTGGGCGTTTAATTTGAA ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 AGACTATTCATCAAAGTTCAGATCTTGTTGATAAAGTTGACACCTTTTTCAATTTTAACAATGGTGGTGGTGAATTTGGTTCTTGGGCGTTTAATTTGAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G17 TCCAGATCAAGGAGAGAATGATCCAGGTTTGTGGATTAGTGAACCTAATGGTGTTGACTCTGGTCTTGTAGCTGCTCCGGTGATGAATAATGGTGGAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 TCCAGATCAAGGAGAGAATGATCCAGGTTTGTGGATTAGTGAACCTAATGGTGTTGACTCTGGTCTTGTAGCTGCTCCGGTGATGAATAATGGTGGAAAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G17 GACTCAACTTCTAATTCTGATTCTCAACCAATTTCTAAGCTTTGTAATGGAAGCTCTGTTGAAAACCCTAACCCTAAAGTTCTGAAATCTTGTGAAATGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 GACTCAACTTCTAATTCTGATTCTCAACCAATTTCTAAGCTTTGTAATGGAAGCTCTGTTGAAAACCCTAACCCTAAAGTTCTGAAATCTTGTGAAATGG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G17 TGAATTTCAAGAATGGGATTGAGAATGGTCAAGAAGAAGATAGTAGTAATAAGAAGAGATCACCGGTTTCGAATAATGAAGAAGGGATGCTTTCTTTTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 TGAATTTCAAGAATGGGATTGAGAATGGTCAAGAAGAAGATAGTAGTAATAAGAAGAGATCACCGGTTTCGAATAATGAAGAAGGGATGCTTTCTTTTAC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G17 CTCTGTTCTTCCATGTGACTCGAATCACTCTGATCTTGAAGCTTCAGTGGCTAAAGAAGCTGAGAGTAACAGAGTTGTGGTTGAACCGGAGAAGAAACCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 CTCTGTTCTTCCATGTGACTCGAATCACTCTGATCTTGAAGCTTCAGTGGCTAAAGAAGCTGAGAGTAACAGAGTTGTGGTTGAACCGGAGAAGAAACCG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G17 AGGAAACGAGGGAGAAAACCGGCGAATGGAAGAGAAGAGCCTTTGAATCATGTAGAGGCAGAGAGACAGAGAAGAGAGAAGTTGAATCAGAGATTCTATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 AGGAAACGAGGGAGAAAACCGGCGAATGGAAGAGAAGAGCCTTTGAATCATGTAGAGGCAGAGAGACAGAGAAGAGAGAAGTTGAATCAGAGATTCTATT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G17 CTTTAAGAGCTGTGGTTCCTAATGTGTCTAAGATGGATAAAGCTTCTCTATTAGGAGATGCTATTTCGTATATCAGTGAGCTTAAGTCTAAGTTGCAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 CTTTAAGAGCTGTGGTTCCTAATGTGTCTAAGATGGATAAAGCTTCTCTATTAGGAGATGCTATTTCGTATATCAGTGAGCTTAAGTCTAAGTTGCAAAA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G17 GGCTGAATCTGATAAAGAAGAGTTGCAGAAGCAGATTGATGTGATGAATAAAGAAGCGGGAAATGCGAAAAGTTCGGTAAAAGATCGAAAATGTTTGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 GGCTGAATCTGATAAAGAAGAGTTGCAGAAGCAGATTGATGTGATGAATAAAGAAGCGGGAAATGCGAAAAGTTCGGTAAAAGATCGAAAATGTTTGAAT 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT4G17 CAAGAATCGAGTGTGTTGATAGAGATGGAGGTTGATGTGAAGATTATTGGTTGGGATGCAATGATAAGGATTCAATGTAGTAAGAGGAATCATCCTGGTG :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 CAAGAATCGAGTGTGTTGATAGAGATGGAGGTTGATGTGAAGGTTATTGGTTGGGATGCAATGATAAGGATTCAATGTAGTAAGAGGAATCATCCTGGTG 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT4G17 CTAAGTTCATGGAAGCACTTAAGGAGTTGGATTTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTTATGATCCAACAAGCGACTGTGAAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 CTAAGTTCATGGAAGCACTTAAGGAGTTGGATTTGGAAGTGAATCATGCGAGTTTATCGGTAGTGAATGATCTTATGATCCAACAAGCGACTGTGAAAAT 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 AT4G17 GGGGAATCAGTTTTTCACGCAAGATCAACTCAAGGTTGCTCTAACGGAGAAAGTTGGAGAATGTCCA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 GGGGAATCAGTTTTTCACGCAAGATCAACTCAAGGTTGCTCTAACGGAGAAAGTTGGAGAATGTCCA 1710 1720 1730 1740 1750 1760 10 20 30 40 50 60 70 80 90 100 AT4G17 MSPTNVQVTDYHLNQSKTDTTNLWSTDDDASVMEAFIGGGSDHSSLFPPLPPPPLPQVNEDNLQQRLQALIEGANENWTYAVFWQSSHGFAGEDNNNNNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 MSPTNVQVTDYHLNQSKTDTTNLWSTDDDASVMEAFIGGGSDHSSLFPPLPPPPLPQVNEDNLQQRLQALIEGANENWTYAVFWQSSHGFAGEDNNNNNT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G17 VLLGWGDGYYKGEEEKSRKKKSNPASAAEQEHRKRVIRELNSLISGGVGGGDEAGDEEVTDTEWFFLVSMTQSFVKGTGLPGQAFSNSDTIWLSGSNALA :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 VLLGWGDGYYKGEEEKPRKKKSNPASAAEQEHRKRVIRELNSLISGGVGGGDEAGDEEVTDTEWFFLVSMTQSFVKGTGLPGQAFSNSDTIWLSGSNALA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G17 GSSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKVDTFFNFNNGGGEFGSWAFNLNPDQGENDPGLWISEPNGVDSGLVAAPVMNNGGN :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 GSSCERARQGQIYGLQTMVCVATENGVVELGSSETIHQSSDLVDKVDTFFNFNNGGGEFGSWAFNLNPDQGENDPGLWISEPNGVDSGLVAAPVMNNGGN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G17 DSTSNSDSQPISKLCNGSSVENPNPKVLKSCEMVNFKNGIENGQEEDSSNKKRSPVSNNEEGMLSFTSVLPCDSNHSDLEASVAKEAESNRVVVEPEKKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 DSTSNSDSQPISKLCNGSSVENPNPKVLKSCEMVNFKNGIENGQEEDSSNKKRSPVSNNEEGMLSFTSVLPCDSNHSDLEASVAKEAESNRVVVEPEKKP 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G17 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKEAGNAKSSVKDRKCLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 RKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKEAGNAKSSVKDRKCLN 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 AT4G17 QESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVALTEKVGECP ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_026 QESSVLIEMEVDVKVIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVALTEKVGECP 510 520 530 540 550 560 570 580

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