| Code name | RE_0292 | |||
|---|---|---|---|---|
| Locus | AT5G57150 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列85.90%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0292_657bp ATGGAGGATATCGTCGACCAAGAATTAAGCAATTACTGGGAACCTAGCTCCTTCCTCCAAAACGAAGACTTCGAATACGACAGAAGCTGGCCTTTGGAAG AAGCCATTTCTGGGTCGTATGATTCGAGTTCGCCGGATGGAGCTGCTTCGTCGCCGGCTTCTAAGAATATTGTGTCGGAGAGAAACAGAAGACAGAAACT TAACCAGAGACTCTTCGCTCTTCGATCAGTTGTTCCCAATATCACTAAGATGGATAAAGCCTCAATAATCAAAGATGCTATTAGTTACATAGAAGGATTA CAATATGAAGAAAAGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTACACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTTG TTCCTGTCACATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGAATTGAAGGTAACATTCATGGGAGAGAGGAC AATGGTGGTGAGTGTAACATGTAATAAGAGGACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCATTGAATCTCAAGATCCTCACTTCCAATCTC ACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAGATTGCAATTGCTAAT >RE_0292_translated MEDIVDQELSNYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGL QYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNL TSFSGMIFHTVFIEIAIAN |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 651/745 (87.4%)（アミノ酸配列で214/251 (85.3%)）一致しました。
10 20 30 40 50 60 70 80 90
AT5G57 ATGGAGGATATCGTCGACCAAGAATTAAGCAATTACTGGGAACCTAGCTCCTTCCTCCAAAACGAAGACTTCGAATACGAC---AGCTGGCCTTTGGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
RE_029 ATGGAGGATATCGTCGACCAAGAATTAAGCAATTACTGGGAACCTAGCTCCTTCCTCCAAAACGAAGACTTCGAATACGACAGAAGCTGGCCTTTGGAAG
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT5G57 AAGCCATTTCTGGGTCGTATGATTCGAGTTCGCCGGATGGAGCTGCTTCGTCGCCGGCTTCTAAGAATATTGTGTCGGAGAGAAACAGAAGACAGAAACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_029 AAGCCATTTCTGGGTCGTATGATTCGAGTTCGCCGGATGGAGCTGCTTCGTCGCCGGCTTCTAAGAATATTGTGTCGGAGAGAAACAGAAGACAGAAACT
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250 260 270 280 290
AT5G57 TAACCAGAGACTCTTCGCTCTTCGATCAGTTGTTCCCAATATCACTAAGATGGATAAAGCCTCAATAATCAAAGATGCTATTAGTTACATAGAAGGATTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_029 TAACCAGAGACTCTTCGCTCTTCGATCAGTTGTTCCCAATATCACTAAGATGGATAAAGCCTCAATAATCAAAGATGCTATTAGTTACATAGAAGGATTA
210 220 230 240 250 260 270 280 290 300
300 310 320 330 340 350 360 370 380 390
AT5G57 CAATATGAAGAAAAGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTACACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_029 CAATATGAAGAAAAGAAGCTCGAAGCTGAGATCAGAGAACTTGAATCTACACCAAAGAGTAGCCTTAGTTTCAGCAAAGATTTTGATCGTGATTTACTTG
310 320 330 340 350 360 370 380 390 400
400 410 420 430 440 450 460 470 480 490
AT5G57 TTCCTGTCACATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGAATTGAAGGTAACATTCATGGGAGAGAGGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_029 TTCCTGTCACATCCAAGAAGATGAAGCAGCTTGATTCTGGTTCTTCCACTTCTCTCATCGAAGTTCTCGAATTGAAGGTAACATTCATGGGAGAGAGGAC
410 420 430 440 450 460 470 480 490 500
500 510 520 530 540 550 560 570 580 590
AT5G57 AATGGTGGTGAGTGTAACATGTAATAAGAGGACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCATTGAATCTCAAAATCCTCACTTCCAATCTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
RE_029 AATGGTGGTGAGTGTAACATGTAATAAGAGGACAGATACAATGGTGAAACTGTGTGAAGTCTTTGAGTCATTGAATCTCAAGATCCTCACTTCCAATCTC
510 520 530 540 550 560 570 580 590 600
600 610 620 630 640 650 660 670 680 690
AT5G57 ACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGAGGCGGA-TGAAGAAGAACAAGAGGTGTTGCGGTTAAAAATAGAAACAGGAATAGGAGCT
::::::::::::::::::::::::::::::::::::::::: :: :: ::: :::: :::
RE_029 ACCTCTTTCTCTGGCATGATCTTCCACACTGTCTTTATTGA----GATTG--------CAA------TTGC---TAAT----------------------
610 620 630 640 650
700 710 720 730 740
AT5G57 TATAATGAAACTCAAAGCCCTACTTTGAGCATCGACTCTCTTTAC
RE_029 ---------------------------------------------
10 20 30 40 50 60 70 80 90
AT5G57 MEDIVDQELSNYWEPSSFLQNEDFEYD-SWPLEEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGL
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_029 MEDIVDQELSNYWEPSSFLQNEDFEYDRSWPLEEAISGSYDSSSPDGAASSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGL
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT5G57 QYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_029 QYEEKKLEAEIRELESTPKSSLSFSKDFDRDLLVPVTSKKMKQLDSGSSTSLIEVLELKVTFMGERTMVVSVTCNKRTDTMVKLCEVFESLNLKILTSNL
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240
AT5G57 TSFSGMIFHTVFIE---ADEEEQEVLRLKIETGIGAYNETQSPTLSIDSLY
:::::::::::::: :.
RE_029 TSFSGMIFHTVFIEIAIAN--------------------------------
210
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