| Code name | RE_02A01 | |||
|---|---|---|---|---|
| Locus | AT4G39100 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | ã¢ããé ¸é å0.90%ä¸è´ | |||
| comment | ‹tŒü‚« | |||
| sequence |
>RE_02A01_684bp ACCTGGTCGCTTAGTGTGTTTGTTCTTCGATTTAGTTACCTCCAGGCTGCGCTTTCCATTCACCTTAGCATCTCTGTTATTGGAAGTTGAATTAGAGTTG TGCAAATTCTGCTGTTGTGGGGAGCACTCTTCGCAGTAGAAGTTATCTGGCTTTTTAGCTTCCTCTATTGTTGTTCCTATACAAGAAGGATGAAACCACT CAGAACACTCCTCGCATTGCACCATCAAGTCATCTGGGTTATACGGCATCTCACACTTGCAGAACACGGTGACTCTGTCAGGATCAAACGCGCCGGTAGT GGAATTGTACTCGAAACGACAGAAGAAGTCGTCGTTTCCAACAGAGTCAAGTTTGGTGTAGCTACTGAAACTGTGAACCTTACACTTTCCTTCAATCGTA TCGGCGCTTTGAAAATCGAAGTGGTCAGAGAGAAAAACCTCCTTGGCTCCATGGAATTGTCTCCTCCCTCCGATAGATTCCTCAGGGCGATAATACCACC TCACACGAACTTTCGCGTGCGATCCACGCGCGTCCGTCTCGATCGCCTCTACCCTCGCTACGTACGACGGTTTTCCAGGCTCCGACGACCGCATCAACAC AGCATCTCCCTCTTGAATACTTTTGTTGATGTGTTTGAGTTTATAGGACTTGAGCTGCTTCCTTGGAGCTTTTTGCTTGGGCAT >RE_02A01_translated TWSLSVFVLRFSYLQAALSIHLSISVIGS*IRVVQILLLWGALFAVEVIWLFSFLYCCSYTRRMKPLRTLLALHHQVIWVIRHLTLAEHGDSVRIKRAGS GIVLETTEEVVVSNRVKFGVATETVNLTLSFNRIGALKIEVVREKNLLGSMELSPPSDRFLRAIIPPHTNFRVRSTRVRLDRLYPRYVRRFSRLRRPHQH SISLLNTFVDVFEFIGLELLPWSFLLGH |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 346/922 (37.5%)（アミノ酸配列で4/447 ( 0.9%)）一致しました。
10 20 30 40
AT4G39 -------------------------------------ATGCCCAAGCAAAAAGC----TCCAAGGA----AGCAGCTC---------AAGTCCTATAAAC
: ::: :: :: :::: : :::: ::: ::::
RE_02A ACCTGGTCGCTTAGTGTGTTTGTTCTTCGATTTAGTTACCTCCAGGC----TGCGCTTTCCATTCACCTTAGCATCTCTGTTATTGGAAGT---------
10 20 30 40 50 60 70 80
50 60 70 80 90 100 110 120 130
AT4G39 TCAAACACATCAACAAGAGT-------ATTCAAGAGGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGAAAAC-CGTCGTACGTAGCGAGGGTAGAG
: :: ::::: :::: :::::: :: :: ::::: :: : ::: : :::::
RE_02A ---------TGAATTAGAGTTGTGCAAATTC----------TGCTGT-----TGTGG-----GGAGC-------ACTCTTCGCA----------GTAGAA
90 100 110 120 130 140
140 150 160 170 180 190 200 210 220
AT4G39 GCGATCGAGACGGACGCGCGTGGATCGCACGCGAAAGTTCGTGTGAGGTGGTATTATCGCCCTGAGGAATCTATCG--------------GAGGGAGGAG
: ::: ::: : : ::: : :: ::::: : :: ::: ::
RE_02A GTTATC--------------TGGCT--------------------------TTTTAGCTTCC-------TCTATTGTTGTTCCTATACAAGAAGGATGAA
150 160 170 180 190
230 240 250 260 270
AT4G39 ACAATTC-------------CATGGAGC---CAAG------GAGGTTTTTC----TCTC-----------------TGACCACTTC------GATTTTCA
:: : :: ::: : : :::: : :::: : : :::: :::: :: :: :::
RE_02A ACCACTCAGAACACTCCTCGCATTGCACCATCAAGTCATCTG-GGTTATACGGCATCTCACACTTGCAGAACACGGTGAC----TCTGTCAGGA---TCA
200 210 220 230 240 250 260 270 280
280 290 300 310 320 330 340
AT4G39 AA-GCGC------------------CGATACGATTGAAGGAAAGT-GTAAGGTTC--ACAGTTTCA--------GTAGCTACACCAAACTTGACTCTGTT
:: :::: ::: :::: :::: :::: :: : ::: :::: ::: :::::::: ::: ::::
RE_02A AACGCGCCGGTAGTGGAATTGTACTCGAAACGACAGAAG--AAGTCGT-CGTTTCCAACAGAGTCAAGTTTGGTGTAGCTAC--------TGAAACTGT-
290 300 310 320 330 340 350 360 370
350 360 370 380 390 400 410 420
AT4G39 GGAA----ACGACGACTT--CTTCTGTCGTTTCGAGTACAATTCCACTACCGGCGCGTTTG---ATCCTGA------CAGAG-------TCACCGT-GTT
::: :: :::: :::: ::: :: :::::: :::: ::: :: ::::: : :: : : :
RE_02A -GAACCTTAC----ACTTTCCTTCAATCG------------------TATCGGCGC-TTTGAAAATC--GAAGTGGTCAGAGAGAAAAACCTCCTTGGCT
380 390 400 410 420 430 440
430 440 450 460 470 480 490
AT4G39 C--TGCAAGTGT-------------GAGATGCCGT-------ATAA------CCCAGATG-ACTTGATGGTGCAATGCGAGGAGTGTTCTGAGTGGTTTC
: :: :: ::: :::: :: : :::: : :: : : :::: :::: :: : : : : :: : :: ::
RE_02A CCATGGAATTGTCTCCTCCCTCCGATAGATTCC-TCAGGGCGATAATACCACCTCACACGAACTTTCGCGTGCGAT-CCACGCGCGTCC------GTCTC
450 460 470 480 490 500 510 520 530 540
500 510 520 530 540 550 560 570 580
AT4G39 -ATC-CTTCT----TGTATAGGAACAACAATAGAGGAAGCTAAAAAGCCAGATAACTTCTA--CTGCGAAGAGTGTTCCCCA-CAACAGCAGAATTTGCA
::: : ::: : :: : :: :: : ::: : :: ::: :: :: :: ::::: ::: :: : :
RE_02A GATCGCCTCTACCCTCGCTACGTACGACGGT------------------------TTTCCAGGCTCCGACGA-----CCGCATCAACA-CAGCATCTCC-
550 560 570 580 590 600
590 600 610 620 630 640 650 660
AT4G39 CAACTCT--AATTCAACTTCCAATAACAGAGATG---CTAAGGTGAATGGA---AAGC-GCAGCC-TGGA------------GGTAACTAAATCGAAGAA
:::: ::: :::: : :::: : :: : : ::: ::: :: :: :::: :: :
RE_02A ---CTCTTGAAT---ACTTTTGTT------GATGTGTTTGAGTTTATAGGACTTGAGCTGCTTCCTTGGAGCTTTTTGCTTGGGCAT-------------
610 620 630 640 650 660 670 680
670 680
AT4G39 CAAACACACTAAGCGACCAGGT
RE_02A ----------------------
AT4G39 ----------------------------------------------------------------------------------------------------
RE_02A TWSLSVFVLRFSYLQAALSIHLSISVIGS*IRVVQILLLWGALFAVEVIWLFSFLYCCSYTRRMKPLRTLLALHHQVIWVIRHLTLAEHGDSVRIKRAGS
10 20 30 40 50 60 70 80 90 100
AT4G39 ----------------------------------------------------------------------------------------------------
RE_02A GIVLETTEEVVVSNRVKFGVATETVNLTLSFNRIGALKIEVVREKNLLGSMELSPPSDRFLRAIIPPHTNFRVRSTRVRLDRLYPRYVRRFSRLRRPHQH
110 120 130 140 150 160 170 180 190 200
10 20 30 40 50 60 70 80
AT4G39 -------------------MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVRVRWYYRPEESIGGRRQFHGAK
.: :. : :
RE_02A SISLLNTFVDVFEFIGLELLP---------WSFLLGH---------------------------------------------------------------
210 220
90 100 110 120 130 140 150 160 170 180
AT4G39 EVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDFFCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPDN
RE_02A ----------------------------------------------------------------------------------------------------
190 200 210 220
AT4G39 FYCEECSPQQQNLHNSNSTSNNRDAKVNGKRSLEVTKSKNKHTKRPG
RE_02A -----------------------------------------------
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