| Code name | RE_02A09 | |||
|---|---|---|---|---|
| Locus | AT1G30500 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_02A09_570bp ATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGATTCTCATTTCCAACCACCAATCCCTTCTGCAAGAA ATTATGAATCAATTGTTACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGGACAATATCCATATCCAGATCCTTACTACAGAAG CATATTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCATCTGATGCAGTCGAGGAA CCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGACAATCAAGAGCAAGACTTGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGC CGTATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGGTTTCTAAATGCCAAGAAGGAGGATGAGCATCACGAAGA CAGTAGTCATGAAGAAAAATCCAACCTTAGCGCTGGTAAATCCGCCATGGCTGCTTCTAGTGGTACATCT >RE_02A09_translated MTSSIHELSDNIGSHEKQEQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEE PVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 558/570 (97.9%)（アミノ酸配列で186/190 (97.9%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G30 ATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGATTCTCATTTCCAACCACCAATCCCTTCTGCAAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02A ATGACTTCTTCAATCCATGAGCTTTCTGATAACATTGGAAGTCATGAGAAGCAAGAACAGAGAGATTCTCATTTCCAACCACCAATCCCTTCTGCAAGAA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G30 ATTATGAATCAATTGTTACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGGACAATATCCATATCCAGATCCTTACTACAGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02A ATTATGAATCAATTGTTACAAGTTTAGTCTACTCAGACCCGGGGACTACAAATTCCATGGCACCTGGACAATATCCATATCCAGATCCTTACTACAGAAG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT1G30 CATATTTGCACCGCCTCCACAACCGTATACCGG------------GTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCATCTGATGCAGTCGAGGAA
::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02A CATATTTGCACCGCCTCCACAACCGTATACCGGGGTACATCTACAGTTGATGGGAGTGCAGCAACAAGGCGTTCCTTTACCATCTGATGCAGTCGAGGAA
210 220 230 240 250 260 270 280 290 300
290 300 310 320 330 340 350 360 370 380
AT1G30 CCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGACAATCAAGAGCAAGACTTGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02A CCTGTTTTTGTTAACGCAAAGCAATACCACGGTATACTAAGGCGCAGACAATCAAGAGCAAGACTTGAGTCTCAGAATAAAGTCATCAAGTCACGTAAGC
310 320 330 340 350 360 370 380 390 400
390 400 410 420 430 440 450 460 470 480
AT1G30 CGTATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGGTTTCTAAATGCCAAGAAGGAGGATGAGCATCACGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02A CGTATTTGCATGAATCTCGGCATTTGCATGCGATAAGACGACCAAGAGGATGTGGCGGGCGGTTTCTAAATGCCAAGAAGGAGGATGAGCATCACGAAGA
410 420 430 440 450 460 470 480 490 500
490 500 510 520 530 540 550
AT1G30 CAGTAGTCATGAAGAAAAATCCAACCTTAGCGCTGGTAAATCCGCCATGGCTGCTTCTAGTGGTACATCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02A CAGTAGTCATGAAGAAAAATCCAACCTTAGCGCTGGTAAATCCGCCATGGCTGCTTCTAGTGGTACATCT
510 520 530 540 550 560 570
10 20 30 40 50 60 70 80 90
AT1G30 MTSSIHELSDNIGSHEKQEQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTG----LMGVQQQGVPLPSDAVEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
RE_02A MTSSIHELSDNIGSHEKQEQRDSHFQPPIPSARNYESIVTSLVYSDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEE
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180
AT1G30 PVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02A PVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS
110 120 130 140 150 160 170 180 190
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