| Code name | RE_02F03 | |||
|---|---|---|---|---|
| Locus | AT5G65410 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | ã¢ããé ¸é å99.60%ä¸è´ | |||
| comment | 11”Ô–Ú‚Éèªã¾ããé åã«æN,‘}“ü | |||
| sequence |
>RE_02F03_840bp ATGGAGTTTGAAGACAACAACAACAACAACAACGACGAAGAGCAAGAAGAGGATATGAATCTTCATGAGGAAGAAGAAGACGACGACGCCGTTTACGACT CTCCTCCTCTCTCTCGTGTTCTCCCCAAAGCCTCGACAGAAAGTCATGAAACCACCGGAACTACTTCCACAGGCGGTGGCGGAGGATTCATGGTTGTTCA CGGCGGTGGAGGGAGCAGGTTTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTCGATGGTTGTGGTGAGTTTATGCCA GCTGGAATCGAAGGTACCATCGACGCTCTAAAATGCGCCGCTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCATCACGCGCCGC CACAACATCAGCCTCCTCCTCCCCCGCCAGGGTTTTACCGTCTTCCAGCTCCGGTTAGCTACCGACCACCACCGTCACAAGCTCCTCCTCTTCAGCTCGC TCTTCCCCCTCCACAAAGAGAGAGATCAGAAGATCCAATGGAGACGTCTTCAGCCGAAGCAGGAGGAGGGATTAGGAAGAGGCATAGGACTAAGTTTACG GCTGAGCAAAAGGAAAGGATGTTAGCTTTAGCTGAGAGGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAGAGATTTTGTCAGGAGACTG GTGTTCCGAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTAAGTCGCCTTCACCACTTCATCATCATCAGGCTCCTCCTCCTCC ACCACCACAGTCTTCGTTTCACCATGAACAAGACCAACCA >RE_02F03_translated MEFEDNNNNNNDEEQEEDMNLHEEEEDDDAVYDSPPLSRVLPKASTESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMP AGIEGTIDALKCAACGCHRNFHRKELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGGGIRKRHRTKFT AEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSPSPLHHHQAPPPPPPQSSFHHEQDQP |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 835/840 (99.4%)（アミノ酸配列で279/280 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90
AT5G65 ATGGAGTTTGAAG---ACAACAACAACAACAACGACGAAGAGCAAGAAGAGGATATGAATCTTCATGAGGAAGAAGAAGACGACGACGCCGTTTACGACT
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F ATGGAGTTTGAAGACAACAACAACAACAACAACGACGAAGAGCAAGAAGAGGATATGAATCTTCATGAGGAAGAAGAAGACGACGACGCCGTTTACGACT
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT5G65 CTCCTCCTCTCTCTCGTGTTCTCCCCAAAGCCTCGACAGAAAGTCATGAAACCACCGGAACTACTTCCACAGGCGGTGGCGGAGGATTCATGGTTGTTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F CTCCTCCTCTCTCTCGTGTTCTCCCCAAAGCCTCGACAGAAAGTCATGAAACCACCGGAACTACTTCCACAGGCGGTGGCGGAGGATTCATGGTTGTTCA
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250 260 270 280 290
AT5G65 CGGCGGTGGAGGGAGCAGGTTTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTCGATGGTTGTGGTGAGTTTATGCCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F CGGCGGTGGAGGGAGCAGGTTTAGGTTCCGTGAGTGTCTCAAGAACCAAGCGGTGAACATAGGAGGACACGCGGTCGATGGTTGTGGTGAGTTTATGCCA
210 220 230 240 250 260 270 280 290 300
300 310 320 330 340 350 360 370 380 390
AT5G65 GCTGGAATCGAAGGTACCATCGACGCTCTAAAATGCGCCGCTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCATCACGCGCCGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F GCTGGAATCGAAGGTACCATCGACGCTCTAAAATGCGCCGCTTGTGGCTGTCACCGTAACTTCCACCGCAAGGAATTACCTTACTTCCATCACGCGCCGC
310 320 330 340 350 360 370 380 390 400
400 410 420 430 440 450 460 470 480 490
AT5G65 CACAACATCAGCCTCCTCCTCCCCCGCCAGGGTTTTACCGTCTTCCAGCTCCGGTTAGCTACCGACCACCACCGTCACAAGCTCCTCCTCTTCAGCTCGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F CACAACATCAGCCTCCTCCTCCCCCGCCAGGGTTTTACCGTCTTCCAGCTCCGGTTAGCTACCGACCACCACCGTCACAAGCTCCTCCTCTTCAGCTCGC
410 420 430 440 450 460 470 480 490 500
500 510 520 530 540 550 560 570 580 590
AT5G65 TCTTCCCCCTCCACAAAGAGAGAGATCAGAAGATCCAATGGAGACGTCTTCAGCTGAAGCAGGAGGAGGGATTAGGAAGAGGCATAGGACTAAGTTTACG
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_02F TCTTCCCCCTCCACAAAGAGAGAGATCAGAAGATCCAATGGAGACGTCTTCAGCCGAAGCAGGAGGAGGGATTAGGAAGAGGCATAGGACTAAGTTTACG
510 520 530 540 550 560 570 580 590 600
600 610 620 630 640 650 660 670 680 690
AT5G65 GCTGAGCAAAAGGAAAGGATGTTAGCTTTAGCTGAGAGGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAGAGATTTTGTCAGGAGACTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F GCTGAGCAAAAGGAAAGGATGTTAGCTTTAGCTGAGAGGATTGGATGGAGAATTCAGAGACAAGACGATGAAGTGATTCAGAGATTTTGTCAGGAGACTG
610 620 630 640 650 660 670 680 690 700
700 710 720 730 740 750 760 770 780 790
AT5G65 GTGTTCCGAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTAAGTCGCCTTCACCACTTCATCATCATCAGGCTCCTCCTCCTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F GTGTTCCGAGACAAGTTCTTAAGGTTTGGTTACATAACAACAAACACACTCTTGGTAAGTCGCCTTCACCACTTCATCATCATCAGGCTCCTCCTCCTCC
710 720 730 740 750 760 770 780 790 800
800 810 820 830
AT5G65 ACCACCACAGTCTTCGTTTCATCATGAACAAGACCAACCA
::::::::::::::::::::: ::::::::::::::::::
RE_02F ACCACCACAGTCTTCGTTTCACCATGAACAAGACCAACCA
810 820 830 840
10 20 30 40 50 60 70 80 90
AT5G65 MEFED-NNNNNDEEQEEDMNLHEEEEDDDAVYDSPPLSRVLPKASTESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMP
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F MEFEDNNNNNNDEEQEEDMNLHEEEEDDDAVYDSPPLSRVLPKASTESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMP
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT5G65 AGIEGTIDALKCAACGCHRNFHRKELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGGGIRKRHRTKFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F AGIEGTIDALKCAACGCHRNFHRKELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPPPQRERSEDPMETSSAEAGGGIRKRHRTKFT
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250 260 270
AT5G65 AEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSPSPLHHHQAPPPPPPQSSFHHEQDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F AEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGKSPSPLHHHQAPPPPPPQSSFHHEQDQP
210 220 230 240 250 260 270 280
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