| Code name | RE_02F09 | |||
|---|---|---|---|---|
| Locus | AT5G23260 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_02F09_756bp ATGGGTAGAGGGAAGATAGAGATAAAGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTATAAAGAAGACTCGTG AGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCTCAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACT CATTGACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAATTGCACCATGAGATGGAACTACTAAGAAGAGAGACA TGTAACCTTGAGCTTCGTCTGCGTCCATTCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGACAGCTAGAACATTCTG TCCTCAAAGTCCGTGAGCGTAAGAATGAGTTAATGCAGCAACAGTTGGAGAATCTAAGCAGAAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTA CCGTTGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCAGGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGC TATAAACCAGGGGAGTATCAGCAGTTTCTAGAGCAGCAGCAACAACAACCAAACAGCGTTCTTCAGCTTGCTACACTTCCTTCTGAGATTGATCCTACTT ACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGATCCAACGGCCCAGAATGAT >RE_02F09_translated MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRET CNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQAGIDTKPGEYQQFIEQLQC YKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNLQLAQPNLQNDPTAQND |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 741/756 (98.0%)（アミノ酸配列で247/252 (98.0%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G23 ATGGGTAGAGGGAAGATAGAGATAAAGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTATAAAGAAGACTCGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F ATGGGTAGAGGGAAGATAGAGATAAAGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTATAAAGAAGACTCGTG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G23 AGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCTCAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F AGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCTCAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G23 CATTGACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAATTGCACCATGAGATGGAACTACTAAGAAGAGAGACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F CATTGACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAATTGCACCATGAGATGGAACTACTAAGAAGAGAGACA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G23 TGTAACCTTGAGCTTCGTCTGCGTCCATTCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGACAGCTAGAACATTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F TGTAACCTTGAGCTTCGTCTGCGTCCATTCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGACAGCTAGAACATTCTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480
AT5G23 TCCTCAAAGTCCGTGAGCGTA---------------AGCAACAGTTGGAGAATCTAAGCAGAAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTA
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F TCCTCAAAGTCCGTGAGCGTAAGAATGAGTTAATGCAGCAACAGTTGGAGAATCTAAGCAGAAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTA
410 420 430 440 450 460 470 480 490 500
490 500 510 520 530 540 550 560 570 580
AT5G23 CCGTTGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCAGGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F CCGTTGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCAGGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGC
510 520 530 540 550 560 570 580 590 600
590 600 610 620 630 640 650 660 670 680
AT5G23 TATAAACCAGGGGAGTATCAGCAGTTTCTAGAGCAGCAGCAACAACAACCAAACAGCGTTCTTCAGCTTGCTACACTTCCTTCTGAGATTGATCCTACTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F TATAAACCAGGGGAGTATCAGCAGTTTCTAGAGCAGCAGCAACAACAACCAAACAGCGTTCTTCAGCTTGCTACACTTCCTTCTGAGATTGATCCTACTT
610 620 630 640 650 660 670 680 690 700
690 700 710 720 730 740
AT5G23 ACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGATCCAACGGCCCAGAATGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F ACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGATCCAACGGCCCAGAATGAT
710 720 730 740 750
10 20 30 40 50 60 70 80 90 100
AT5G23 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRET
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190
AT5G23 CNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERK-----QQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQAGIDTKPGEYQQFIEQLQC
::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F CNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQQAGIDTKPGEYQQFIEQLQC
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240
AT5G23 YKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNLQLAQPNLQNDPTAQND
::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02F YKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNLQLAQPNLQNDPTAQND
210 220 230 240 250
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