Code name | RE_02G06 | |||
---|---|---|---|---|
Locus | AT1G49950 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
comment | ||||
sequence |
>RE_02G06_900bp ATGGGTGCTCCTAAGCAGAAATGGACTCAAGAAGAAGAGTCAGCTTTAAAGTCTGGGGTTATAAAGCATGGACCTGGTAAATGGCGCACAATTCTCAAAG ATCCTGAATTTAGCGGAGTCTTGTACCTGCGTTCCAATGTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCAAATGGCTGGGGATCGCGCGA AAAGTCTAGGTTAGCTGTTAAAAGGACGTTCTCCCTTCCTAAACAGGAAGAGAACTCACTAGCCCTAACCAATTCTTTGCAAAGTGATGAAGAAAATGTG GATGCGACCTCTGGACTCCAAGTTTCTTCTAATCCTCCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAATGGAAGCAATAGCTACCCTGAAAG AACCTGGTGGCTGTAACAAAACAACAATTGGTGCCTACATTGAGGATCAATATCATGCTCCACCAGACTTCAAACGCTTGTTGTCTACCAAGCTAAAGTA CCTGACATCTTGCGGGAAACTTGTGAAGGTTAAACGTAAGTACAGAATTCCAAACTCCACTCCCTTGTCTTCCCACAGGAGAAAAGGTCTGGGGGTGTTT GGAGGAAAACAGAGGACTTCTTCTTTGCCTTCACCTAAAACAGACATAGATGAAGTGAATTTTCAGACAAGGTCACAGATTGATACAGAGATAGCCAGAA TGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGCAGCACAGGCAGTAGCAGAGGCAGAAGCTGCCATGGCAGAGGCTGAGGAAGCTGCAAAGGAAGC GGAGGCAGCAGAAGCCGAAGCAGAAGCAGCTCAAGCTTTCGCTGAGGAAGCTTCAAAGACATTGAAAGGAAGAAACATCTGCAAAATGATGATCCGTGCC >RE_02G06_translated MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMANGWGSREKSRLAVKRTFSLPKQEENSLALTNSLQSDEENV DATSGLQVSSNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKRKYRIPNSTPLSSHRRKGLGVF GGKQRTSSLPSPKTDIDEVNFQTRSQIDTEIARMKSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGRNICKMMIRA |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 898/900 (99.8%)(アミノ酸配列で100%)一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G49 ATGGGTGCTCCTAAGCAGAAATGGACTCAAGAAGAAGAGTCAGCTTTAAAGTCTGGAGTTATAAAGCATGGACCTGGTAAATGGCGCACAATTCTCAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: RE_02G ATGGGTGCTCCTAAGCAGAAATGGACTCAAGAAGAAGAGTCAGCTTTAAAGTCTGGGGTTATAAAGCATGGACCTGGTAAATGGCGCACAATTCTCAAAG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G49 ATCCTGAATTTAGCGGAGTCTTGTACCTGCGTTCCAATGTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCAAATGGCTGGGGATCGCGCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G ATCCTGAATTTAGCGGAGTCTTGTACCTGCGTTCCAATGTTGATCTTAAGGACAAATGGAGAAACATGAGTGTCATGGCAAATGGCTGGGGATCGCGCGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G49 AAAGTCTAGGTTAGCTGTTAAAAGGACGTTCTCCCTTCCTAAACAGGAAGAGAACTCACTAGCCCTAACCAATTCTTTGCAAAGTGATGAAGAAAATGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G AAAGTCTAGGTTAGCTGTTAAAAGGACGTTCTCCCTTCCTAAACAGGAAGAGAACTCACTAGCCCTAACCAATTCTTTGCAAAGTGATGAAGAAAATGTG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G49 GATGCGACCTCTGGACTCCAAGTTTCTTCTAATCCTCCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAATGGAAGCAATAGCTACCCTGAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G GATGCGACCTCTGGACTCCAAGTTTCTTCTAATCCTCCTCCAAGGAGACCTAATGTAAGGTTGGATAGCCTTATAATGGAAGCAATAGCTACCCTGAAAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G49 AACCTGGTGGCTGTAACAAAACAACAATTGGTGCCTACATTGAGGATCAATATCATGCTCCACCAGACTTCAAACGCTTGTTGTCTACCAAGCTAAAGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G AACCTGGTGGCTGTAACAAAACAACAATTGGTGCCTACATTGAGGATCAATATCATGCTCCACCAGACTTCAAACGCTTGTTGTCTACCAAGCTAAAGTA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G49 CTTGACATCTTGCGGGAAACTTGTGAAGGTTAAACGTAAGTACAGAATTCCAAACTCCACTCCCTTGTCTTCCCACAGGAGAAAAGGTCTGGGGGTGTTT : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G CCTGACATCTTGCGGGAAACTTGTGAAGGTTAAACGTAAGTACAGAATTCCAAACTCCACTCCCTTGTCTTCCCACAGGAGAAAAGGTCTGGGGGTGTTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G49 GGAGGAAAACAGAGGACTTCTTCTTTGCCTTCACCTAAAACAGACATAGATGAAGTGAATTTTCAGACAAGGTCACAGATTGATACAGAGATAGCCAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G GGAGGAAAACAGAGGACTTCTTCTTTGCCTTCACCTAAAACAGACATAGATGAAGTGAATTTTCAGACAAGGTCACAGATTGATACAGAGATAGCCAGAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G49 TGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGCAGCACAGGCAGTAGCAGAGGCAGAAGCTGCCATGGCAGAGGCTGAGGAAGCTGCAAAGGAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G TGAAGAGTATGAACGTACATGAGGCGGCAGCAGTTGCAGCACAGGCAGTAGCAGAGGCAGAAGCTGCCATGGCAGAGGCTGAGGAAGCTGCAAAGGAAGC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G49 GGAGGCAGCAGAAGCCGAAGCAGAAGCAGCTCAAGCTTTCGCTGAGGAAGCTTCAAAGACATTGAAAGGAAGAAACATCTGCAAAATGATGATCCGTGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G GGAGGCAGCAGAAGCCGAAGCAGAAGCAGCTCAAGCTTTCGCTGAGGAAGCTTCAAAGACATTGAAAGGAAGAAACATCTGCAAAATGATGATCCGTGCC 810 820 830 840 850 860 870 880 890 900 10 20 30 40 50 60 70 80 90 100 AT1G49 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMANGWGSREKSRLAVKRTFSLPKQEENSLALTNSLQSDEENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMANGWGSREKSRLAVKRTFSLPKQEENSLALTNSLQSDEENV 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G49 DATSGLQVSSNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKRKYRIPNSTPLSSHRRKGLGVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G DATSGLQVSSNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLVKVKRKYRIPNSTPLSSHRRKGLGVF 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G49 GGKQRTSSLPSPKTDIDEVNFQTRSQIDTEIARMKSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGRNICKMMIRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_02G GGKQRTSSLPSPKTDIDEVNFQTRSQIDTEIARMKSMNVHEAAAVAAQAVAEAEAAMAEAEEAAKEAEAAEAEAEAAQAFAEEASKTLKGRNICKMMIRA 210 220 230 240 250 260 270 280 290 300 |