| Code name | RE_02G08 | |||
|---|---|---|---|---|
| Locus | AT1G70000 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | - | |||
| comment | GRA | |||
| sequence |
>RE_02G08_813bp ATGCCAACTTTGTACAAAAAAGCAGGCTTCATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGTCCGACGGACATAACTA CCACCGGTGACAACAACGACAAAGGCGGCGGGGAGAAAGCCATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGT TAGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCAACCGATGACGGTGGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGA AACCGTGAACGCAAACGAGGAACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATAAAGTTGGAAAAGGTGATTGGAGAGGAATCT CTAGAAACTTTGTTAAAACTCGAACACCTACTCAGGTAGCGAGTCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGTCGTCGTCGTAGATC AAGCCTCTTCGATATCACTCCCGATTCGTTTATAGGATCATCAAAAGAAGAGAATCAGTTACAGACTCCATTGGAGCTAATCCGTCCAGTTCCGATTCCT ATTCCGATTCCACCGTCGCGGAAGATGGCTGATTTGAATCTTAACAAGAAAAAAACTCCAGCGACAACGGAGATGTTTCCGCTGTCGCTGAATTTGCAGA GGCCGTCTTCGTCGACATCGTCATCGTCCAATGAACAGAAGGCACGTGGCTCACGTGCCTCCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTAT AATGGGAGTGGCT >RE_02G08_translated MPTLYKKAGFMSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSMNNLSQFDQTPDPNPTDDGGYASDDVVHASGR NRERKRGTPWTEEEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDITPDSFIGSSKEENQLQTPLELIRPVPIP IPIPPSRKMADLNLNKKKTPATTEMFPLSLNLQRPSSSTSSSSNEQKARGSRASSGFEAMSSNGDSIMGVA |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 783/813 (96.3%)（アミノ酸配列で261/271 (96.3%)）一致しました。
10 20 30 40 50 60 70
AT1G70 ------------------------------ATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGTCCGACGGACATAACTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G ATGCCAACTTTGTACAAAAAAGCAGGCTTCATGTCACGTAGTTGCTCACAGTGTGGAAACAACGGCCACAACTCTCGCACATGTCCGACGGACATAACTA
10 20 30 40 50 60 70 80 90 100
80 90 100 110 120 130 140 150 160 170
AT1G70 CCACCGGTGACAACAACGACAAAGGCGGCGGGGAGAAAGCCATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G CCACCGGTGACAACAACGACAAAGGCGGCGGGGAGAAAGCCATCATGCTTTTTGGCGTCCGCGTCACGGAAGCTTCATCATCTTGTTTTAGAAAAAGTGT
110 120 130 140 150 160 170 180 190 200
180 190 200 210 220 230 240 250 260 270
AT1G70 TAGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCAACCGATGACGGTGGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G TAGTATGAACAATCTCTCTCAATTCGATCAAACTCCTGATCCCAACCCAACCGATGACGGTGGTTACGCTTCAGACGACGTCGTTCACGCCTCCGGTAGA
210 220 230 240 250 260 270 280 290 300
280 290 300 310 320 330 340 350 360 370
AT1G70 AACCGTGAACGCAAACGAGGAACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATAAAGTTGGAAAAGGTGATTGGAGAGGAATCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G AACCGTGAACGCAAACGAGGAACTCCATGGACAGAGGAAGAACATAGATTGTTTCTTACTGGATTGCATAAAGTTGGAAAAGGTGATTGGAGAGGAATCT
310 320 330 340 350 360 370 380 390 400
380 390 400 410 420 430 440 450 460 470
AT1G70 CTAGAAACTTTGTTAAAACTCGAACACCTACTCAGGTAGCGAGTCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGTCGTCGTCGTAGATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G CTAGAAACTTTGTTAAAACTCGAACACCTACTCAGGTAGCGAGTCATGCTCAGAAATATTTTCTCCGGCGGACTAATCAGAATCGTCGTCGTCGTAGATC
410 420 430 440 450 460 470 480 490 500
480 490 500 510 520 530 540 550 560 570
AT1G70 AAGCCTCTTCGATATCACTCCCGATTCGTTTATAGGATCATCAAAAGAAGAGAATCAGTTACAGACTCCATTGGAGCTAATCCGTCCAGTTCCGATTCCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G AAGCCTCTTCGATATCACTCCCGATTCGTTTATAGGATCATCAAAAGAAGAGAATCAGTTACAGACTCCATTGGAGCTAATCCGTCCAGTTCCGATTCCT
510 520 530 540 550 560 570 580 590 600
580 590 600 610 620 630 640 650 660 670
AT1G70 ATTCCGATTCCACCGTCGCGGAAGATGGCTGATTTGAATCTTAACAAGAAAAAAACTCCAGCGACAACGGAGATGTTTCCGCTGTCGCTGAATTTGCAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G ATTCCGATTCCACCGTCGCGGAAGATGGCTGATTTGAATCTTAACAAGAAAAAAACTCCAGCGACAACGGAGATGTTTCCGCTGTCGCTGAATTTGCAGA
610 620 630 640 650 660 670 680 690 700
680 690 700 710 720 730 740 750 760 770
AT1G70 GGCCGTCTTCGTCGACATCGTCATCGTCCAATGAACAGAAGGCACGTGGCTCACGTGCCTCCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G GGCCGTCTTCGTCGACATCGTCATCGTCCAATGAACAGAAGGCACGTGGCTCACGTGCCTCCTCGGGGTTCGAGGCGATGTCGAGTAATGGAGATAGTAT
710 720 730 740 750 760 770 780 790 800
780
AT1G70 AATGGGAGTGGCT
:::::::::::::
RE_02G AATGGGAGTGGCT
810
10 20 30 40 50 60 70 80 90
AT1G70 ----------MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSMNNLSQFDQTPDPNPTDDGGYASDDVVHASGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G MPTLYKKAGFMSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSMNNLSQFDQTPDPNPTDDGGYASDDVVHASGR
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT1G70 NRERKRGTPWTEEEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDITPDSFIGSSKEENQLQTPLELIRPVPIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G NRERKRGTPWTEEEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDITPDSFIGSSKEENQLQTPLELIRPVPIP
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250 260
AT1G70 IPIPPSRKMADLNLNKKKTPATTEMFPLSLNLQRPSSSTSSSSNEQKARGSRASSGFEAMSSNGDSIMGVA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02G IPIPPSRKMADLNLNKKKTPATTEMFPLSLNLQRPSSSTSSSSNEQKARGSRASSGFEAMSSNGDSIMGVA
210 220 230 240 250 260 270
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