| Code name | RE_02H04 | |||
|---|---|---|---|---|
| Locus | AT5G01200 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_02H04_801bp ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCAAACACAAACTGGATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGG AGAACAAACGGTTCGAGAAAGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTCCAAGATCGCAGATTTGATTCCCGGCAAAACAGTAGC TGACGTCATTAAACGATACAAGGAGCTAGAGGATGATGTCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCT GCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCGTTGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTA GGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGA TTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAACGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAA GACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACGCATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTA CTCCAGCCAATTCCTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATTATAATGCGTTTCCGCAGTGGAG T >RE_02H04_translated MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSA ANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGK DKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 800/801 (99.9%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G01 ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCAAACACAAACTGGATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCAAACACAAACTGGATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G01 AGAACAAACGGTTCGAGAAAGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTCCAAGATCGCAGATTTGATTCCCGGCAAAACAGTAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H AGAACAAACGGTTCGAGAAAGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTCCAAGATCGCAGATTTGATTCCCGGCAAAACAGTAGC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G01 TGACGTCATTAAACGATACAAGGAGCTAGAGGATGATGTCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H TGACGTCATTAAACGATACAAGGAGCTAGAGGATGATGTCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G01 GCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCGTTGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H GCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCGTTGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G01 GGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H GGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCGTGGACCGAGGACGAACACCTACGATTTCTGATGGGTTTGAAGAAATATGGAAAAGGAGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G01 TTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAACGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H TTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAACGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G01 GACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACGCATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H GACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACGCATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G01 CTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATTATAATGCGTTTCCGCAGTGGAG
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H CTCCAGCCAATTCCTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATTATAATGCGTTTCCGCAGTGGAG
710 720 730 740 750 760 770 780 790 800
AT5G01 T
:
RE_02H T
10 20 30 40 50 60 70 80 90 100
AT5G01 MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G01 ANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H ANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGK
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT5G01 DKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_02H DKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS
210 220 230 240 250 260
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