| Code name | RE_0306 | |||
|---|---|---|---|---|
| Locus | AT1G13600 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0306_585bp ATGAATACGATTCCAGCCGAACTCACTGGATACTTCCACTATCTACCACCAGATAAATATAATAACCAAACACCAATCATGGAGTCTGAGTACTTCAACA TGCCCTCTTCTCCTACTTCTTGTTCCTCCTTCTACCACCTCAATGGTCTGATCAACAACAACTACTCTTCATCATCCAATGGTCAGGATCTAATGACGAG CAACAACTCAACTTCAGACGAAGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGGAGAATGATCTCTAACAGGGAATCTGCTCGTAGGTCA AGAATGAGAAAGCAGAGACATCTCGATGAGCTTTGGTCTCAAGTGATAAGACTTCGCACTGATAACCACTGTCTTATGGATAAGCTGAACCGCGTATCTG AAAGCCATGAGCTTGCTTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGATCTCAGACAGCTGATCTCTGAGATAAAGTCACACAACGAAGACGA CAACAGTTTTTTAAGAGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTTTGAGTTGTGT >RE_0306_translated MNTIPAELTGYFHYLPPDKYNNQTPIMESEYFNMPSSPTSCSSFYHLNGLINNNYSSSSNGQDLMTSNNSTSDEDHQQSMVIDERKQRRMISNRESARRS RMRKQRHLDELWSQVIRLRTDNHCLMDKLNRVSESHELALKENAKLKEETSDLRQLISEIKSHNEDDNSFLRELEDSISNSRSDSNQSGRDFELC |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 584/588 (99.3%)（アミノ酸配列で195/196 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G13 ATGAACACGATTCCAGCCGAACTCACTGGATACTTCCACTATCTACCACCAGATAAATATAATAACCAAACACCAATCATGGAGTCTGAGTACTTCAACA
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_030 ATGAATACGATTCCAGCCGAACTCACTGGATACTTCCACTATCTACCACCAGATAAATATAATAACCAAACACCAATCATGGAGTCTGAGTACTTCAACA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G13 TGCCCTCTTCTCCTACTTCTTGTTCCTCCTTCTACCACCTCAATGGTCTGATCAACAACAACAACTACTCTTCATCATCCAATGGTCAGGATCTAATGAC
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_030 TGCCCTCTTCTCCTACTTCTTGTTCCTCCTTCTACCACCTCAATGGTCTGAT---CAACAACAACTACTCTTCATCATCCAATGGTCAGGATCTAATGAC
110 120 130 140 150 160 170 180 190
210 220 230 240 250 260 270 280 290 300
AT1G13 GAGCAACAACTCAACTTCAGACGAAGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGGAGAATGATCTCTAACAGGGAATCTGCTCGTAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_030 GAGCAACAACTCAACTTCAGACGAAGATCACCAACAAAGTATGGTCATCGATGAGAGGAAACAAAGGAGAATGATCTCTAACAGGGAATCTGCTCGTAGG
200 210 220 230 240 250 260 270 280 290
310 320 330 340 350 360 370 380 390 400
AT1G13 TCAAGAATGAGAAAGCAGAGACATCTCGATGAGCTTTGGTCTCAAGTGATAAGACTTCGCACTGATAACCACTGTCTTATGGATAAGCTGAACCGCGTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_030 TCAAGAATGAGAAAGCAGAGACATCTCGATGAGCTTTGGTCTCAAGTGATAAGACTTCGCACTGATAACCACTGTCTTATGGATAAGCTGAACCGCGTAT
300 310 320 330 340 350 360 370 380 390
410 420 430 440 450 460 470 480 490 500
AT1G13 CTGAAAGCCATGAGCTTGCTTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGATCTCAGACAGCTGATCTCTGAGATAAAGTCACACAACGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_030 CTGAAAGCCATGAGCTTGCTTTAAAGGAGAACGCTAAGCTTAAAGAGGAAACTTCTGATCTCAGACAGCTGATCTCTGAGATAAAGTCACACAACGAAGA
400 410 420 430 440 450 460 470 480 490
510 520 530 540 550 560 570 580
AT1G13 CGACAACAGTTTTTTAAGAGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTTTGAGTTGTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_030 CGACAACAGTTTTTTAAGAGAGCTCGAAGATTCGATATCAAACTCTAGATCGGATTCGAACCAAAGCGGCAGAGATTTTGAGTTGTGT
500 510 520 530 540 550 560 570 580
10 20 30 40 50 60 70 80 90 100
AT1G13 MNTIPAELTGYFHYLPPDKYNNQTPIMESEYFNMPSSPTSCSSFYHLNGLINNNNYSSSSNGQDLMTSNNSTSDEDHQQSMVIDERKQRRMISNRESARR
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
RE_030 MNTIPAELTGYFHYLPPDKYNNQTPIMESEYFNMPSSPTSCSSFYHLNGLI-NNNYSSSSNGQDLMTSNNSTSDEDHQQSMVIDERKQRRMISNRESARR
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190
AT1G13 SRMRKQRHLDELWSQVIRLRTDNHCLMDKLNRVSESHELALKENAKLKEETSDLRQLISEIKSHNEDDNSFLRELEDSISNSRSDSNQSGRDFELC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_030 SRMRKQRHLDELWSQVIRLRTDNHCLMDKLNRVSESHELALKENAKLKEETSDLRQLISEIKSHNEDDNSFLRELEDSISNSRSDSNQSGRDFELC
100 110 120 130 140 150 160 170 180 190
|
|||