◆◆◆RE_0309 detail◆◆◆

Code name	RE_0309
Locus	AT1G22070
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0311_アミノ酸配列100%一致
sequence	>RE_0309_1152bp ATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACATGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAGTC CTTTCAAATCAGATATCAACAATATTACTAGTAATCAGAATAACAATCAGAGTTCTTCAACAACACTTGAGGTTGATGCTAGACCAGAAGCAGATGATAA CAATAGAGTGAATTATACTTCTGTGTATAATAACTCTCTTGAAGCAGAACCGTCGAGTAATAATGATCAGGACGAAGACCGGATCAATGATAAGATGAAA CGGCGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTTCAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGC TCGAGCAGGAACTTGTAAGAGCTAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATCTAGGACCAGCTGGGAATATGAACTCAGGTAT TGCTGCATTTGAGATGGAATACACACACTGGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAGGTGACATTGAG CTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCCGCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAA TGTGGCGAACTTCAACTGAACGCTTCTTCCAATGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATGTTGTGATGCCATACGTTGAGCCCTTAACCGA TCAGCAACTGTTGGAGGTGCGTAACCTGCAACAGTCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGGGTTTGGTCGAA AGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTCCAATGGCTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACC AGGCGGATCATCTGAGACAACAGACCCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTCGAGGGTTGCTCGCTCTAGGGGAATACTTCCA CAGGCTGCGTGCTCTTAGTTCTCTCTGGGCAGCTCGTCCACGAGAACACACT >RE_0309_translated MEMMSSSSSTTQVVSFRDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDARPEADDNNRVNYTSVYNNSLEAEPSSNNDQDEDRINDKMK RRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQQGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIE LKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVE SIAIQIKVVESVNHGAPMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLWAARPREHT
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1151/1152 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G22 ATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACATGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 ATGGAGATGATGAGCTCTTCTTCTTCTACTACTCAAGTTGTATCATTCAGAGACATGGGGATGTATGAACCATTTCAACAGTTATCTGGTTGGGAGAGTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G22 CTTTCAAATCAGATATCAACAATATTACTAGTAATCAGAATAACAATCAGAGTTCTTCAACAACACTTGAGGTTGATGCTAGACCAGAAGCAGATGATAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 CTTTCAAATCAGATATCAACAATATTACTAGTAATCAGAATAACAATCAGAGTTCTTCAACAACACTTGAGGTTGATGCTAGACCAGAAGCAGATGATAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G22 CAATAGAGTGAATTATACTTCTGTGTATAATAACTCTCTTGAAGCAGAACCGTCGAGTAATAATGATCAGGACGAAGACCGGATCAATGATAAGATGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 CAATAGAGTGAATTATACTTCTGTGTATAATAACTCTCTTGAAGCAGAACCGTCGAGTAATAATGATCAGGACGAAGACCGGATCAATGATAAGATGAAA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G22 CGGCGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTTCAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 CGGCGTTTGGCTCAGAACCGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTTCAACAGTTAGAAGAAAGCCGGTTGAAGTTGTCACAGC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G22 TCGAGCAGGAACTTGTAAGAGCTAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATCTAGGACCAGCTGGGAATATGAACTCAGGTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 TCGAGCAGGAACTTGTAAGAGCTAGGCAGCAGGGATTATGCGTACGCAATTCTTCAGATACTAGTTATCTAGGACCAGCTGGGAATATGAACTCAGGTAT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G22 TGCTGCATTTGAGATGGAATACACACACTGGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAGGTGACATTGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 TGCTGCATTTGAGATGGAATACACACACTGGCTAGAAGAGCAAAACAGGAGAGTTAGTGAGATTCGAACAGCGCTCCAAGCTCATATAGGTGACATTGAG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G22 CTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCCGCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 CTCAAAATGTTGGTAGATAGTTGCTTGAACCACTACGCAAATCTCTTCCGCATGAAAGCTGATGCTGCAAAGGCTGATGTGTTCTTCTTGATGTCGGGAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G22 TGTGGCGAACTTCAACTGAACGCTTCTTCCAATGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATGTTGTGATGCCATACGTTGAGCCCTTAACCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 TGTGGCGAACTTCAACTGAACGCTTCTTCCAATGGATTGGAGGTTTCCGCCCATCCGAGCTTTTAAATGTTGTGATGCCATACGTTGAGCCCTTAACCGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G22 TCAGCAACTGTTGGAGGTGCGTAACCTGCAACAGTCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGGGTTTGGTCGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 TCAGCAACTGTTGGAGGTGCGTAACCTGCAACAGTCGTCTCAGCAAGCAGAGGAGGCTCTCTCTCAAGGCTTAGATAAACTTCAGCAGGGTTTGGTCGAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G22 AGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTCCAATGGCTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 AGCATAGCAATTCAGATAAAAGTTGTTGAGTCTGTGAATCACGGGGCTCCAATGGCTTCAGCCATGGAGAATCTTCAAGCATTGGAGAGTTTTGTGAACC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G22 AGGCGGATCATCTGAGACAACAGACCCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTCGAGGGTTGCTCGCTCTAGGAGAATACTTCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: RE_030 AGGCGGATCATCTGAGACAACAGACCCTGCAGCAAATGAGTAAGATATTGACGACAAGACAGGCTGCTCGAGGGTTGCTCGCTCTAGGGGAATACTTCCA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 AT1G22 CAGGCTGCGTGCTCTTAGTTCTCTCTGGGCAGCTCGTCCACGAGAACACACT :::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 CAGGCTGCGTGCTCTTAGTTCTCTCTGGGCAGCTCGTCCACGAGAACACACT 1110 1120 1130 1140 1150 10 20 30 40 50 60 70 80 90 100 AT1G22 MEMMSSSSSTTQVVSFRDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDARPEADDNNRVNYTSVYNNSLEAEPSSNNDQDEDRINDKMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 MEMMSSSSSTTQVVSFRDMGMYEPFQQLSGWESPFKSDINNITSNQNNNQSSSTTLEVDARPEADDNNRVNYTSVYNNSLEAEPSSNNDQDEDRINDKMK 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G22 RRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQQGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 RRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQQGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIE 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G22 LKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 LKMLVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQGLDKLQQGLVE 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 AT1G22 SIAIQIKVVESVNHGAPMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLWAARPREHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_030 SIAIQIKVVESVNHGAPMASAMENLQALESFVNQADHLRQQTLQQMSKILTTRQAARGLLALGEYFHRLRALSSLWAARPREHT 310 320 330 340 350 360 370 380

このページのTOPに戻る