◆◆◆RE_0315 detail◆◆◆

Code name	RE_0315
Locus	AT1G58110
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0315_1122bp ATGGCTAGCTCCAAGGGATCACAGAGTGTTAGAAACTTGATGTACCCGGGAAAGCATGCTTTGCTCCCACCAAAAATACCGTTTCCTAGTGTATCAGCAT CGTATTCCGAGCATATTCCTACTGGTTTGATTGGTTCAAGACATGGCCAGAAGCTTAGTAATGAGAAAACACATCACCAGCGAACTTCCTCCGAGAGCCA TTTGGTAGAAGAGCTTCCCTTTTGGCTTGATGATCTTCTCAATGAGCAGCCGGAAAGCCCTGCTCGAAAATGTGGTCATCGGCGTTCATCAAGTGACTCT TACGCTTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTCCAAAATGATTTCAGTTATAGGAATACTGTTTTATCCACTCAAAGAGGAGTCC AAGAGCTTGACCGGAATAAAAATGCTCAGGATGCTGCCTTCTACTCTGGTGCTAGTTTTCTGAAACAGAAGAGTCGTCAGCGGGATTCTTTGGTGGCAAC TGGGGCTTGTCCTTCTTGGTTACCTTTCGCTCGTGAGAACGGTGGCGGAAAAAACTTGGGAGCTTTATATATGTCTCAAGATGCAACAGTAATATCGTCA GAAAGAAAGAACTATGCTGAACCTTTTTCTCATGACCCAAAGATGTTATCTTCTGAGGAAAACAACTCCAATCCTTCGCCTGTGACTTATGAAGCTGACA ACACAAAACGAGCCAAACAGCAATTTGCACAAAGATCACGGGTCCGTAAGCTCCAGTACATATCTGAGCTAGAAAGAAATGTACAGACATTGCAGGCAGA AGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACCAGAGGAATCTTATTCTGAGTATGGAAAATAAAGCTCTCAAGAAGCGTCTCGAAAGTATAGCT CAGGAGAAGCTTATCAAACAATTGGAACAAGAAGTGTTGGAAAAGGAGATTGGGAGACTACGAGCGTTGTATCAGCAACAACAACAAACTCAAAAACCAT CAGCCAGTCGCGGACGTGCTACTAGCAAAGATCTCGACTCTCAGTTCTCCAGTCTTTCACTGAACACCAAAGATTCCAACTGTAGGCGTGACTCTGTATC TGTGATGGGTCAATTCCACTTT >RE_0315_translated MASSKGSQSVRNLMYPGKHALLPPKIPFPSVSASYSEHIPTGLIGSRHGQKLSNEKTHHQRTSSESHLVEELPFWLDDLLNEQPESPARKCGHRRSSSDS YAYLDVANATNISLTLQNDFSYRNTVLSTQRGVQELDRNKNAQDAAFYSGASFLKQKSRQRDSLVATGACPSWLPFARENGGGKNLGALYMSQDATVISS ERKNYAEPFSHDPKMLSSEENNSNPSPVTYEADNTKRAKQQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKALKKRLESIA QEKLIKQLEQEVLEKEIGRLRALYQQQQQTQKPSASRGRATSKDLDSQFSSLSLNTKDSNCRRDSVSVMGQFHF
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1120/1122 (99.8%)（アミノ酸配列で373/374 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G58 ATGGCTAGCTCCAAGGGATCACAGAGTGTTAGAAACTTGATGTACCCGGGAAAGCATGCTTTGCTCCCACCAAAAATACCGTTTCCTAGTGTATCAGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 ATGGCTAGCTCCAAGGGATCACAGAGTGTTAGAAACTTGATGTACCCGGGAAAGCATGCTTTGCTCCCACCAAAAATACCGTTTCCTAGTGTATCAGCAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G58 CGTATTCCGAGTATATTCCTACTGGTTTGATTGGTTCAAGACATGGTCAGAAGCTTAGTAATGAGAAAACACATCACCAGCGAACTTCCTCCGAGAGCCA ::::::::::: :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 CGTATTCCGAGCATATTCCTACTGGTTTGATTGGTTCAAGACATGGCCAGAAGCTTAGTAATGAGAAAACACATCACCAGCGAACTTCCTCCGAGAGCCA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G58 TTTGGTAGAAGAGCTTCCCTTTTGGCTTGATGATCTTCTCAATGAGCAGCCGGAAAGCCCTGCTCGAAAATGTGGTCATCGGCGTTCATCAAGTGACTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 TTTGGTAGAAGAGCTTCCCTTTTGGCTTGATGATCTTCTCAATGAGCAGCCGGAAAGCCCTGCTCGAAAATGTGGTCATCGGCGTTCATCAAGTGACTCT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G58 TACGCTTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTCCAAAATGATTTCAGTTATAGGAATACTGTTTTATCCACTCAAAGAGGAGTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 TACGCTTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTCCAAAATGATTTCAGTTATAGGAATACTGTTTTATCCACTCAAAGAGGAGTCC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G58 AAGAGCTTGACCGGAATAAAAATGCTCAGGATGCTGCCTTCTACTCTGGTGCTAGTTTTCTGAAACAGAAGAGTCGTCAGCGGGATTCTTTGGTGGCAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 AAGAGCTTGACCGGAATAAAAATGCTCAGGATGCTGCCTTCTACTCTGGTGCTAGTTTTCTGAAACAGAAGAGTCGTCAGCGGGATTCTTTGGTGGCAAC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G58 TGGGGCTTGTCCTTCTTGGTTACCTTTCGCTCGTGAGAACGGTGGCGGAAAAAACTTGGGAGCTTTATATATGTCTCAAGATGCAACAGTAATATCGTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 TGGGGCTTGTCCTTCTTGGTTACCTTTCGCTCGTGAGAACGGTGGCGGAAAAAACTTGGGAGCTTTATATATGTCTCAAGATGCAACAGTAATATCGTCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G58 GAAAGAAAGAACTATGCTGAACCTTTTTCTCATGACCCAAAGATGTTATCTTCTGAGGAAAACAACTCCAATCCTTCGCCTGTGACTTATGAAGCTGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 GAAAGAAAGAACTATGCTGAACCTTTTTCTCATGACCCAAAGATGTTATCTTCTGAGGAAAACAACTCCAATCCTTCGCCTGTGACTTATGAAGCTGACA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G58 ACACAAAACGAGCCAAACAGCAATTTGCACAAAGATCACGGGTCCGTAAGCTCCAGTACATATCTGAGCTAGAAAGAAATGTACAGACATTGCAGGCAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 ACACAAAACGAGCCAAACAGCAATTTGCACAAAGATCACGGGTCCGTAAGCTCCAGTACATATCTGAGCTAGAAAGAAATGTACAGACATTGCAGGCAGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G58 AGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACCAGAGGAATCTTATTCTGAGTATGGAAAATAAAGCTCTCAAGAAGCGTCTCGAAAGTATAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 AGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACCAGAGGAATCTTATTCTGAGTATGGAAAATAAAGCTCTCAAGAAGCGTCTCGAAAGTATAGCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G58 CAGGAGAAGCTTATCAAACAATTGGAACAAGAAGTGTTGGAAAAGGAGATTGGGAGACTACGAGCGTTGTATCAGCAACAACAACAAACTCAAAAACCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 CAGGAGAAGCTTATCAAACAATTGGAACAAGAAGTGTTGGAAAAGGAGATTGGGAGACTACGAGCGTTGTATCAGCAACAACAACAAACTCAAAAACCAT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G58 CAGCCAGTCGCGGACGTGCTACTAGCAAAGATCTCGACTCTCAGTTCTCCAGTCTTTCACTGAACACCAAAGATTCCAACTGTAGGCGTGACTCTGTATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 CAGCCAGTCGCGGACGTGCTACTAGCAAAGATCTCGACTCTCAGTTCTCCAGTCTTTCACTGAACACCAAAGATTCCAACTGTAGGCGTGACTCTGTATC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 AT1G58 TGTGATGGGTCAATTCCACTTT :::::::::::::::::::::: RE_031 TGTGATGGGTCAATTCCACTTT 1110 1120 10 20 30 40 50 60 70 80 90 100 AT1G58 MASSKGSQSVRNLMYPGKHALLPPKIPFPSVSASYSEYIPTGLIGSRHGQKLSNEKTHHQRTSSESHLVEELPFWLDDLLNEQPESPARKCGHRRSSSDS :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 MASSKGSQSVRNLMYPGKHALLPPKIPFPSVSASYSEHIPTGLIGSRHGQKLSNEKTHHQRTSSESHLVEELPFWLDDLLNEQPESPARKCGHRRSSSDS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G58 YAYLDVANATNISLTLQNDFSYRNTVLSTQRGVQELDRNKNAQDAAFYSGASFLKQKSRQRDSLVATGACPSWLPFARENGGGKNLGALYMSQDATVISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 YAYLDVANATNISLTLQNDFSYRNTVLSTQRGVQELDRNKNAQDAAFYSGASFLKQKSRQRDSLVATGACPSWLPFARENGGGKNLGALYMSQDATVISS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G58 ERKNYAEPFSHDPKMLSSEENNSNPSPVTYEADNTKRAKQQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKALKKRLESIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 ERKNYAEPFSHDPKMLSSEENNSNPSPVTYEADNTKRAKQQFAQRSRVRKLQYISELERNVQTLQAEGSKVSAELDFLNQRNLILSMENKALKKRLESIA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT1G58 QEKLIKQLEQEVLEKEIGRLRALYQQQQQTQKPSASRGRATSKDLDSQFSSLSLNTKDSNCRRDSVSVMGQFHF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_031 QEKLIKQLEQEVLEKEIGRLRALYQQQQQTQKPSASRGRATSKDLDSQFSSLSLNTKDSNCRRDSVSVMGQFHF 310 320 330 340 350 360 370

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