◆◆◆RE_0339 detail◆◆◆

Code name	RE_0339
Locus	AT3G19290
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0339_1293bp ATGGGAACTCACATCAATTTCAACAACTTAGGAGGTGGTGGTCATCCTGGAGGGGAAGGGAGTAGTAACCAGATGAAGCCAACGGGTAGTGTCATGCCCT TGGCTAGGCAGTCCTCGGTCTACTCCCTTACCTTTGATGAGTTACAGAACACACTAGGTGGACCGGGAAAAGATTTCGGGTCGATGAACATGGATGAACT CCTGAAGAGCATATGGACTGCTGAGGAAGCTCAGGCCATGGCCATGACTTCTGCGCCAGCTGCTACAGCGGTAGCGCAACCTGGTGCTGGTATCCCACCC CCAGGTGGGAATCTCCAGAGGCAAGGTTCGTTGACGTTGCCTAGAACAATTAGTCAGAAGACTGTTGATGAGGTGTGGAAATTTTTGATCACCAAGGATG GTAATATGGAAGGTAGCAGCGGAGGCGGTGGTGAGTCGAATGTGCCTCCTGGAAGGCAACAGACTTTAGGGGAAATGACACTTGAAGAATTTCTGTTCCG TGCTGGGGTTGTAAGAGAAGATAACTGTGTTCAACAGATGGGTCAGGTCAACGGAAACAATAACAATGGGTTTTATGGTAACAGCACTGCTGCTGGCGGC TTAGGTTTTGGATTTGGTCAGCCAAATCAAAACAGCATAACATTCAATGGTACTAATGATTCTATGATCTTGAATCAGCCACCTGGTTTAGGGCTCAAAA TGGGTGGAACAATGCAGCAGCAACAACAACAACAGCAGTTGCTTCAGCGGCAACAACAGCAGATGCAGCAGCTGAATCAGCCTCATCCACAGCAGCGGCT GCCTCAAACCATTTTTCCTAAACAAGCAAACGTAGCATTTTCTGCGCCTGTGAATATAACCAACAAGGGTTTTGCTGGGGCTGCAAATAATTCTATCAAC AATAATAATGGATTAGCTAGTTACGGAGGAACCGGGGTCACTGTTGCAGCAACTTCTCCAGGAACAAGCAGCGCAGAAAATAATTCTTTATCACCAGTTC CGTATGTGCTTAATCGAGGACGAAGAAGCAATACAGGTCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAG ATCAAGAGCTCGAAAGCAGGCTTATACATTGGAACTGGAAGCCGAAATTGAAAAGCTCAAGAAAACGAATCAAGAACTGCAGAAAAAACAGGCTGAAATG GTGGAAATGCAGAAGAATGAGCTGAAAGAAACGTCGAAGCGACCGTGGGGCAGCAAAAGGCAATGCTTGAGAAGGACATTAACCGGACCATGG >RE_0339_translated MGTHINFNNLGGGGHPGGEGSSNQMKPTGSVMPLARQSSVYSLTFDELQNTLGGPGKDFGSMNMDELLKSIWTAEEAQAMAMTSAPAATAVAQPGAGIPP PGGNLQRQGSLTLPRTISQKTVDEVWKFLITKDGNMEGSSGGGGESNVPPGRQQTLGEMTLEEFLFRAGVVREDNCVQQMGQVNGNNNNGFYGNSTAAGG LGFGFGQPNQNSITFNGTNDSMILNQPPGLGLKMGGTMQQQQQQQQLLQRQQQQMQQLNQPHPQQRLPQTIFPKQANVAFSAPVNITNKGFAGAANNSIN NNNGLASYGGTGVTVAATSPGTSSAENNSLSPVPYVLNRGRRSNTGLEKVIERRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNQELQKKQAEM VEMQKNELKETSKRPWGSKRQCLRRTLTGPW
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1291/1293 (99.8%)（アミノ酸配列で429/431 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G19 ATGGGAACTCACATCAATTTCAACAACTTAGGAGGTGGTGGTCATCCTGGAGGGGAAGGGAGTAGTAACCAGATGAAGCCAACGGGTAGTGTCATGCCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 ATGGGAACTCACATCAATTTCAACAACTTAGGAGGTGGTGGTCATCCTGGAGGGGAAGGGAGTAGTAACCAGATGAAGCCAACGGGTAGTGTCATGCCCT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G19 TGGCTAGGCAGTCCTCGGTCTACTCCCTTACCTTTGATGAGTTACAGAACACACTAGGTGGACCGGGAAAAGATTTCGGGTCGATGAACATGGATGAACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 TGGCTAGGCAGTCCTCGGTCTACTCCCTTACCTTTGATGAGTTACAGAACACACTAGGTGGACCGGGAAAAGATTTCGGGTCGATGAACATGGATGAACT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G19 CCTGAAGAGCATATGGACTGCTGAGGAAGCTCAGGCCATGGCCATGACTTCTGCGCCAGCTGCTACAGCGGTAGCGCAACCTGGTGCTGGTATCCCACCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 CCTGAAGAGCATATGGACTGCTGAGGAAGCTCAGGCCATGGCCATGACTTCTGCGCCAGCTGCTACAGCGGTAGCGCAACCTGGTGCTGGTATCCCACCC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G19 CCAGGTGGGAATCTCCAGAGGCAAGGTTCGTTGACGTTGCCTAGAACAATTAGTCAGAAGACTGTTGATGAGGTGTGGAAATGTTTGATCACCAAGGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: RE_033 CCAGGTGGGAATCTCCAGAGGCAAGGTTCGTTGACGTTGCCTAGAACAATTAGTCAGAAGACTGTTGATGAGGTGTGGAAATTTTTGATCACCAAGGATG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G19 GTAATATGGAAGGTAGCAGCGGAGGCGGTGGTGAGTCGAATGTGCCTCCTGGAAGGCAACAGACTTTAGGGGAAATGACACTTGAAGAATTTCTGTTCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 GTAATATGGAAGGTAGCAGCGGAGGCGGTGGTGAGTCGAATGTGCCTCCTGGAAGGCAACAGACTTTAGGGGAAATGACACTTGAAGAATTTCTGTTCCG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G19 TGCTGGGGTTGTAAGAGAAGATAACTGTGTTCAACAGATGGGTCAGGTCAACGGAAACAATAACAATGGGTTTTATGGTAACAGCACTGCTGCTGGCGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 TGCTGGGGTTGTAAGAGAAGATAACTGTGTTCAACAGATGGGTCAGGTCAACGGAAACAATAACAATGGGTTTTATGGTAACAGCACTGCTGCTGGCGGC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G19 TTAGGTTTTGGATTTGGTCAGCCAAATCAAAACAGCATAACATTCAATGGTACTAATGATTCTATGATCTTGAATCAGCCACCTGGTTTAGGGCTCAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 TTAGGTTTTGGATTTGGTCAGCCAAATCAAAACAGCATAACATTCAATGGTACTAATGATTCTATGATCTTGAATCAGCCACCTGGTTTAGGGCTCAAAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G19 TGGGTGGAACAATGCAGCAGCAACAACAACAACAGCAGTTGCTTCAGCAGCAACAACAGCAGATGCAGCAGCTGAATCAGCCTCATCCACAGCAGCGGCT :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 TGGGTGGAACAATGCAGCAGCAACAACAACAACAGCAGTTGCTTCAGCGGCAACAACAGCAGATGCAGCAGCTGAATCAGCCTCATCCACAGCAGCGGCT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G19 GCCTCAAACCATTTTTCCTAAACAAGCAAACGTAGCATTTTCTGCGCCTGTGAATATAACCAACAAGGGTTTTGCTGGGGCTGCAAATAATTCTATCAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 GCCTCAAACCATTTTTCCTAAACAAGCAAACGTAGCATTTTCTGCGCCTGTGAATATAACCAACAAGGGTTTTGCTGGGGCTGCAAATAATTCTATCAAC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G19 AATAATAATGGATTAGCTAGTTACGGAGGAACCGGGGTCACTGTTGCAGCAACTTCTCCAGGAACAAGCAGCGCAGAAAATAATTCTTTATCACCAGTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 AATAATAATGGATTAGCTAGTTACGGAGGAACCGGGGTCACTGTTGCAGCAACTTCTCCAGGAACAAGCAGCGCAGAAAATAATTCTTTATCACCAGTTC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G19 CGTATGTGCTTAATCGAGGACGAAGAAGCAATACAGGTCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 CGTATGTGCTTAATCGAGGACGAAGAAGCAATACAGGTCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAGAATCGGGAATCAGCTGCTAG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G19 ATCAAGAGCTCGAAAGCAGGCTTATACATTGGAACTGGAAGCCGAAATTGAAAAGCTCAAGAAAACGAATCAAGAACTGCAGAAAAAACAGGCTGAAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 ATCAAGAGCTCGAAAGCAGGCTTATACATTGGAACTGGAAGCCGAAATTGAAAAGCTCAAGAAAACGAATCAAGAACTGCAGAAAAAACAGGCTGAAATG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 AT3G19 GTGGAAATGCAGAAGAATGAGCTGAAAGAAACGTCGAAGCGACCGTGGGGCAGCAAAAGGCAATGCTTGAGAAGGACATTAACCGGACCATGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 GTGGAAATGCAGAAGAATGAGCTGAAAGAAACGTCGAAGCGACCGTGGGGCAGCAAAAGGCAATGCTTGAGAAGGACATTAACCGGACCATGG 1210 1220 1230 1240 1250 1260 1270 1280 1290 10 20 30 40 50 60 70 80 90 100 AT3G19 MGTHINFNNLGGGGHPGGEGSSNQMKPTGSVMPLARQSSVYSLTFDELQNTLGGPGKDFGSMNMDELLKSIWTAEEAQAMAMTSAPAATAVAQPGAGIPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 MGTHINFNNLGGGGHPGGEGSSNQMKPTGSVMPLARQSSVYSLTFDELQNTLGGPGKDFGSMNMDELLKSIWTAEEAQAMAMTSAPAATAVAQPGAGIPP 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G19 PGGNLQRQGSLTLPRTISQKTVDEVWKCLITKDGNMEGSSGGGGESNVPPGRQQTLGEMTLEEFLFRAGVVREDNCVQQMGQVNGNNNNGFYGNSTAAGG ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 PGGNLQRQGSLTLPRTISQKTVDEVWKFLITKDGNMEGSSGGGGESNVPPGRQQTLGEMTLEEFLFRAGVVREDNCVQQMGQVNGNNNNGFYGNSTAAGG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G19 LGFGFGQPNQNSITFNGTNDSMILNQPPGLGLKMGGTMQQQQQQQQLLQQQQQQMQQLNQPHPQQRLPQTIFPKQANVAFSAPVNITNKGFAGAANNSIN :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 LGFGFGQPNQNSITFNGTNDSMILNQPPGLGLKMGGTMQQQQQQQQLLQRQQQQMQQLNQPHPQQRLPQTIFPKQANVAFSAPVNITNKGFAGAANNSIN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G19 NNNGLASYGGTGVTVAATSPGTSSAENNSLSPVPYVLNRGRRSNTGLEKVIERRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNQELQKKQAEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_033 NNNGLASYGGTGVTVAATSPGTSSAENNSLSPVPYVLNRGRRSNTGLEKVIERRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNQELQKKQAEM 310 320 330 340 350 360 370 380 390 400 410 420 430 AT3G19 VEMQKNELKETSKRPWGSKRQCLRRTLTGPW ::::::::::::::::::::::::::::::: RE_033 VEMQKNELKETSKRPWGSKRQCLRRTLTGPW 410 420 430

このページのTOPに戻る