◆◆◆RE_0350 detail◆◆◆

Code name	RE_0350
Locus	AT4G02640
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列88.60%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0350_1098bp ATGTTTCTCGAAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGGTAACAACAACAACGCGATCGTCGGTGTTTCTTCGGCGCAATCTCTTCCTT CTGTTTCCGGACAGAATGATTTCGAGGATGATAGTCGATTTCGTGATCGCGATTCGGGAAATTTGGATTGTGCTGCTCCCATGACGACGAAGACGGTGAT TGTTGATTCCGATGATTATCGTCGTGTTCTTAAGAACAAGCTTGAGACTGAGTGCGCTACTGTTGTTTCTCTTCGGGTTGGGTCTGTGAAGCCTGAAGAT TCGACTAGTTCTCCAGAAACTCAACTTCAACCAGTTCAATCCAGTCCTCTTACTCAAGGAAAACTTGGTGTTACTTCTTCCTTACCAGCTGAGGTGAAAA AAACTGGTGTATCAATGAAGCAGGCTACTAGTGGATCGTCGAGAGAATATTCTGATGACGAGGACCTTGATGAAGAGAATGAAACCACCGGTTCCTTGAA GCCAGAGGACGTTAAAAAATCTAGAAGGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAAGGAGAAAGCAGGAGCAAACAAGTGACCTCGAAACA CAGGTTAATGATCTAAAAGGTGAGCATTCATCACTTCTTAAACAACTGAGCAACATGAATCACAAGTATGACGAGGCTGCTGTTGGCAATAGAATACTAA AGGCTGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCGTGAAGAGAGTAACAGGAATGAATCCGATGCTTCTCGGAAGATCAAGTGG ACATAACAACAACAACAGAATGCCAATAACTGGTAACAACAGGATGGATTCTTCTAGCATTATTCCAGCTTATCAACCACACTCAAACCTAAACCATATG TCAAACCAAAACATCGGGATCCCAACCATTCTACCTCCAAGACTCGGAAACAATTTCGCTGCTCCTCCATCCCAAACCAGCTCTCCCTTGCAGAGAATTA GAAATGGGCAAAATCACCATGTTACTCCAAGCGCCAACCCGTATGGCTGGAATACCGAACCTCAGAACGATTCAGCATGGCCGAAAAAATGCGTGGAC >RE_0350_translated MFLEEISSSAVSSEPLGNNNNAIVGVSSAQSLPSVSGQNDFEDDSRFRDRDSGNLDCAAPMTTKTVIVDSDDYRRVLKNKLETECATVVSLRVGSVKPED STSSPETQLQPVQSSPLTQGKLGVTSSLPAEVKKTGVSMKQATSGSSREYSDDEDLDEENETTGSLKPEDVKKSRRMLSNRESARRSRRRKQEQTSDLET QVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETVKRVTGMNPMLLGRSSGHNNNNRMPITGNNRMDSSSIIPAYQPHSNLNHM SNQNIGIPTILPPRLGNNFAAPPSQTSSPLQRIRNGQNHHVTPSANPYGWNTEPQNDSAWPKKCVD
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1096/1233 (88.9%)（アミノ酸配列で364/411 (88.6%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G02 ATGAACAGTATCTTCTCCATTGACGATTTCTCCGATCCTTTCTGGGAAACTCCTCCGATTCCTCTCAATCCCGACTCTTCTAAGCCTGTTACGGCGGATG RE_035 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT4G02 AAGTTAGCCAGAGTCAACCGGAATGGACTTTCGAGATGTTTCTCGAAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGGTAACAACAACAACGC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 -----------------------------------ATGTTTCTCGAAGAGATTTCTTCGTCGGCGGTGAGCTCTGAGCCACTTGGTAACAACAACAACGC 10 20 30 40 50 60 210 220 230 240 250 260 270 280 290 300 AT4G02 GATCGTCGGTGTTTCTTCGGCGCAATCTCTTCCTTCTGTTTCCGGACAGAATGATTTCGAGGATGATAGTCGATTTCGTGATCGCGATTCGGGAAATTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GATCGTCGGTGTTTCTTCGGCGCAATCTCTTCCTTCTGTTTCCGGACAGAATGATTTCGAGGATGATAGTCGATTTCGTGATCGCGATTCGGGAAATTTG 70 80 90 100 110 120 130 140 150 160 310 320 330 340 350 360 370 380 390 400 AT4G02 GATTGTGCTGCTCCCATGACGACGAAGACGGTGATTGTTGATTCCGATGATTATCGTCGTGTTCTTAAGAACAAGCTTGAGACTGAGTGCGCTACTGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GATTGTGCTGCTCCCATGACGACGAAGACGGTGATTGTTGATTCCGATGATTATCGTCGTGTTCTTAAGAACAAGCTTGAGACTGAGTGCGCTACTGTTG 170 180 190 200 210 220 230 240 250 260 410 420 430 440 450 460 470 480 490 500 AT4G02 TTTCTCTTCGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTAGTTCTCCAGAAACTCAACTTCAACCAGTTCAATCCAGTCCTCTTACTCAAGGAGAACT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: RE_035 TTTCTCTTCGGGTTGGGTCTGTGAAGCCTGAAGATTCGACTAGTTCTCCAGAAACTCAACTTCAACCAGTTCAATCCAGTCCTCTTACTCAAGGAAAACT 270 280 290 300 310 320 330 340 350 360 510 520 530 540 550 560 570 580 590 600 AT4G02 TGGTGTTACTTCTTCCTTACCAGCTGAGGTGAAAAAAACTGGTGTATCAATGAAGCAGGTTACTAGTGGATCGTCGAGAGAATATTCTGATGACGAGGAC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: RE_035 TGGTGTTACTTCTTCCTTACCAGCTGAGGTGAAAAAAACTGGTGTATCAATGAAGCAGGCTACTAGTGGATCGTCGAGAGAATATTCTGATGACGAGGAC 370 380 390 400 410 420 430 440 450 460 610 620 630 640 650 660 670 680 690 700 AT4G02 CTTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAAGGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 CTTGATGAAGAGAATGAAACCACCGGTTCCTTGAAGCCAGAGGACGTTAAAAAATCTAGAAGGATGCTGTCAAATCGTGAGTCAGCTAGGCGATCTAGAA 470 480 490 500 510 520 530 540 550 560 710 720 730 740 750 760 770 780 790 800 AT4G02 GGAGAAAGCAGGAGCAAACAAGTGACCTCGAAACACAGGTTAATGATCTAAAAGGTGAGCATTCATCACTTCTTAAACAACTGAGCAACATGAATCACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GGAGAAAGCAGGAGCAAACAAGTGACCTCGAAACACAGGTTAATGATCTAAAAGGTGAGCATTCATCACTTCTTAAACAACTGAGCAACATGAATCACAA 570 580 590 600 610 620 630 640 650 660 810 820 830 840 850 860 870 880 890 900 AT4G02 GTATGACGAGGCTGCTGTTGGCAATAGAATACTAAAGGCTGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCGTGAAGAGAGTAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GTATGACGAGGCTGCTGTTGGCAATAGAATACTAAAGGCTGACATTGAGACATTAAGAGCTAAGGTGAAAATGGCGGAAGAAACCGTGAAGAGAGTAACA 670 680 690 700 710 720 730 740 750 760 910 920 930 940 950 960 970 980 990 1000 AT4G02 GGAATGAATCCGATGCTTCTCGGAAGATCAAGTGGACATAACAACAACAACAGAATGCCAATAACTGGTAACAACAGGATGGATTCTTCTAGCATTATTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GGAATGAATCCGATGCTTCTCGGAAGATCAAGTGGACATAACAACAACAACAGAATGCCAATAACTGGTAACAACAGGATGGATTCTTCTAGCATTATTC 770 780 790 800 810 820 830 840 850 860 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G02 CAGCTTATCAACCACACTCAAACCTAAACCATATGTCAAACCAAAACATCGGGATCCCAACCATTCTACCTCCAAGACTCGGAAACAATTTCGCTGCTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 CAGCTTATCAACCACACTCAAACCTAAACCATATGTCAAACCAAAACATCGGGATCCCAACCATTCTACCTCCAAGACTCGGAAACAATTTCGCTGCTCC 870 880 890 900 910 920 930 940 950 960 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G02 TCCATCCCAAACCAGCTCTCCCTTGCAGAGAATTAGAAATGGGCAAAATCACCATGTTACTCCAAGCGCCAACCCGTATGGCTGGAATACCGAACCTCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 TCCATCCCAAACCAGCTCTCCCTTGCAGAGAATTAGAAATGGGCAAAATCACCATGTTACTCCAAGCGCCAACCCGTATGGCTGGAATACCGAACCTCAG 970 980 990 1000 1010 1020 1030 1040 1050 1060 1210 1220 1230 AT4G02 AACGATTCAGCATGGCCGAAAAAATGCGTGGAC ::::::::::::::::::::::::::::::::: RE_035 AACGATTCAGCATGGCCGAAAAAATGCGTGGAC 1070 1080 1090 10 20 30 40 50 60 70 80 90 100 AT4G02 MNSIFSIDDFSDPFWETPPIPLNPDSSKPVTADEVSQSQPEWTFEMFLEEISSSAVSSEPLGNNNNAIVGVSSAQSLPSVSGQNDFEDDSRFRDRDSGNL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 ---------------------------------------------MFLEEISSSAVSSEPLGNNNNAIVGVSSAQSLPSVSGQNDFEDDSRFRDRDSGNL 10 20 30 40 50 110 120 130 140 150 160 170 180 190 200 AT4G02 DCAAPMTTKTVIVDSDDYRRVLKNKLETECATVVSLRVGSVKPEDSTSSPETQLQPVQSSPLTQGELGVTSSLPAEVKKTGVSMKQVTSGSSREYSDDED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: ::::::::::::: RE_035 DCAAPMTTKTVIVDSDDYRRVLKNKLETECATVVSLRVGSVKPEDSTSSPETQLQPVQSSPLTQGKLGVTSSLPAEVKKTGVSMKQATSGSSREYSDDED 60 70 80 90 100 110 120 130 140 150 210 220 230 240 250 260 270 280 290 300 AT4G02 LDEENETTGSLKPEDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETVKRVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 LDEENETTGSLKPEDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETVKRVT 160 170 180 190 200 210 220 230 240 250 310 320 330 340 350 360 370 380 390 400 AT4G02 GMNPMLLGRSSGHNNNNRMPITGNNRMDSSSIIPAYQPHSNLNHMSNQNIGIPTILPPRLGNNFAAPPSQTSSPLQRIRNGQNHHVTPSANPYGWNTEPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GMNPMLLGRSSGHNNNNRMPITGNNRMDSSSIIPAYQPHSNLNHMSNQNIGIPTILPPRLGNNFAAPPSQTSSPLQRIRNGQNHHVTPSANPYGWNTEPQ 260 270 280 290 300 310 320 330 340 350 410 AT4G02 NDSAWPKKCVD ::::::::::: RE_035 NDSAWPKKCVD 360

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