Code name | RE_0359 | |||
---|---|---|---|---|
Locus | AT4G38900 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列98.70%一致 | |||
comment | 0311_アミノ酸配列70%以上一致 | |||
sequence |
>RE_0359_1641bp ATGGGTGATACAGAGAAGTGTAACAGTGATATGATCCAGAGACTTCATTCATCTTTCGGCACTACTTCTTCTTCCATTCCCAAAAATCCCATTTCTCAGC TCGATTTAAACCCTAATTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAATCGGTGTTCCTCCGTCGCACCCCAA CTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCCGACCACCCGACAACCCGGTTCGCATAATTTTAACCCGGGAGGAGCTAATCATTCACGGTCAATG TCACAGCCCAACTCTTTCTTCTCTTTTGACTCCTTACCTCCGTTAAGCCCTTCTCCGTTTCGAGATCACGATGTTTCAATGGAGGATAGAGATTCCGGCG TGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAATTCGACCTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAA GTCTCATAGACGCTCCAACAGTGATATCCCCAGTGGGTTTAATTCGATGCCTTTGATCCCTCCGAGACCATTGGAGAGGTCTTTTTCTGGTGGGGAGTGT GCTGATTGGTCAAAGTCTAATCCTTTTGTGAAGAGGGAATCGAGCTGCGAAAGGGAAGGTGTCGGAGAGAGAGAAGCTATGGATGATCTCTTCTCAGCAT ATATGAATCTTGAAAACATTGATGTGTTGAACTCCTCTGAAGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGCAAG CGGGACCAAGACTAACGGTAGTGATACGGAAGGAGAGAGCAGCAGTGTCAATGAGAGTGCCAATAATAATATGAATTCTTCTGGTGAAAAGAGAGAGAGC GTGAAGAGAAGAGCGGCTGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAGTTGTTTCATGGAGAAGTTGTCTTTTGGTG ATGAATCTCTAAAGCCGCCTCCTTCTCCTGGATCTATGTCAAGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAACTCGGGTGCTGCTTTTAGCATCGA GTTCAATAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAATGATAAACTAGCAGAGATGGCCATGTCTGACCCTAAACGTGTCAAAAGA ATCTTAGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTACATAGTAGAATTGGAACACAAAGTGCAGACTCTTCAGACCGAGGCTA CCACATTGTCTGCTCAGCTCACACTTTTGCAGCGCGATATGATGGGGTTGACAAACCAGAACAATGAGCTTAAGTTCCGGCTTCAAGCAATGGAGCAACA AGCGCGTCTTCGCGATGCTCTGAACGAAGCACTGAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGAGCAGTCAGAACGAATCAGAGAGATCA AAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTCAACATCAGCCAGTTAAGACAGCAGCCACAACAGATGCAGCAACAGTCTCATCAGCAGAACC ACCAGAATGGAACCATGGCAACAAAATCTGAATCAAATGAA >RE_0359_translated MGDTEKCNSDMIQRLHSSFGTTSSSIPKNPISQLDLNPNFIRSSAPQFSKPFSDSGKRIGVPPSHPNLIPPTSPFSQIPTTRQPGSHNFNPGGANHSRSM SQPNSFFSFDSLPPLSPSPFRDHDVSMEDRDSGVFNSNHSLPPSPFTRCNSTSSSSLRVGESLPPRKSHRRSNSDIPSGFNSMPLIPPRPLERSFSGGEC ADWSKSNPFVKRESSCEREGVGEREAMDDLFSAYMNLENIDVLNSSEADDSKNGNENRDDMESSRASGTKTNGSDTEGESSSVNESANNNMNSSGEKRES VKRRAAGGDIAPTTRHYRSVSVDSCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKIMANDKLAEMAMSDPKRVKR ILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNELKFRLQAMEQQARLRDALNEALNGEVQRLKLAIGESSQNESERS KMQSLNAEMFQQLNISQLRQQPQQMQQQSHQQNHQNGTMATKSESNE |
|||
Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 1639/1659 (98.8%)(アミノ酸配列で546/553 (98.7%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G38 ATGGGTGATACAGAGAAGTGTAACAGTGATATGATCCAGAGACTTCATTCATCTTTCGGCACTACTTCTTCTTCCATTCCCAAAAATCCCATTTCTCAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 ATGGGTGATACAGAGAAGTGTAACAGTGATATGATCCAGAGACTTCATTCATCTTTCGGCACTACTTCTTCTTCCATTCCCAAAAATCCCATTTCTCAGC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G38 TCGATTTAAACCCTAATTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAATCGGTGTTCCTCCGTCGCACCCCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 TCGATTTAAACCCTAATTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAATCGGTGTTCCTCCGTCGCACCCCAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G38 CTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCCGACCACCCGACAACCCGGTTCGCATAATTTTAACCCGGGAGGAGCTAATCATTCACGGTCAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 CTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCCGACCACCCGACAACCCGGTTCGCATAATTTTAACCCGGGAGGAGCTAATCATTCACGGTCAATG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G38 TCACAGCCCAACTCTTTCTTCTCTTTTGACTCCTTACCTCCGTTAAGCCCTTCTCCGTTTCGAGATCACGATGTTTCAATGGAGGATAGAGATTCCGGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 TCACAGCCCAACTCTTTCTTCTCTTTTGACTCCTTACCTCCGTTAAGCCCTTCTCCGTTTCGAGATCACGATGTTTCAATGGAGGATAGAGATTCCGGCG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G38 TGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAATTCGACCTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 TGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAATTCGACCTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G38 GTCTCATAGACGCTCCAACAGTGATATCCCCAGTGGGTTTAATTCGATGCCTTTGATCCCTCCGAGACCATTGGAGAGGTCTTTTTCTGGTGGGGAGTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GTCTCATAGACGCTCCAACAGTGATATCCCCAGTGGGTTTAATTCGATGCCTTTGATCCCTCCGAGACCATTGGAGAGGTCTTTTTCTGGTGGGGAGTGT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G38 GCTGATTGGTCAAAGTCTAATCCTTTTGTGAAGAAGGAATCGAGCTGCGAAAGGGAAGGTGTCGGAGAGAGAGAAGCTATGGATGATCTCTTCTCAGCAT :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GCTGATTGGTCAAAGTCTAATCCTTTTGTGAAGAGGGAATCGAGCTGCGAAAGGGAAGGTGTCGGAGAGAGAGAAGCTATGGATGATCTCTTCTCAGCAT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G38 ATATGAATCTTGAAAACATTGATGTGTTGAACTCCTCTGAAGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGCAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 ATATGAATCTTGAAAACATTGATGTGTTGAACTCCTCTGAAGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGCAAG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G38 CGGGACCAAGACTAACGGTAGTGATACGGAAGGAGAGAGCAGCAGTGTCAATGAGAGTGCCAATAATAATATGAATTCTTCTGGTGAAAAGAGAGAGAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 CGGGACCAAGACTAACGGTAGTGATACGGAAGGAGAGAGCAGCAGTGTCAATGAGAGTGCCAATAATAATATGAATTCTTCTGGTGAAAAGAGAGAGAGC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G38 GTGAAGAGAAGAGCGGCTGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAGTTGTTTCATGGAGAAGTTGTCTTTTGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GTGAAGAGAAGAGCGGCTGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAGTTGTTTCATGGAGAAGTTGTCTTTTGGTG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G38 ATGAATCTCTAAAGCCGCCTCCTTCTCCTGGATCTATGTCAAGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAACTCGGGTGCTGCTTTTAGCATCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 ATGAATCTCTAAAGCCGCCTCCTTCTCCTGGATCTATGTCAAGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAACTCGGGTGCTGCTTTTAGCATCGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G38 GTTCAATAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAATGATAAACTAGCAGAGATGGCCATGTCTGACCCTAAACGTGTCAAAAGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 GTTCAATAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAATGATAAACTAGCAGAGATGGCCATGTCTGACCCTAAACGTGTCAAA--- 1110 1120 1130 1140 1150 1160 1170 1180 1190 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G38 AATGATCCTCTTTTCAGAATCTTAGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTACATAGTAGAATTGGAACACAAAGTGCAGA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 ---------------AGAATCTTAGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTACATAGTAGAATTGGAACACAAAGTGCAGA 1200 1210 1220 1230 1240 1250 1260 1270 1280 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G38 CTCTTCAGACCGAGGCTACCACATTGTCTGCTCAGCTCACACTTTTGCAGCGCGATATGATGGGGTTGACAAATCAGAACAATGAGCTTAAGTTCCGGCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_035 CTCTTCAGACCGAGGCTACCACATTGTCTGCTCAGCTCACACTTTTGCAGCGCGATATGATGGGGTTGACAAACCAGAACAATGAGCTTAAGTTCCGGCT 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G38 TCAAGCAATGGAGCAACAAGCGCGTCTTCGCGATGCTCTGAACGAAGCACTGAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGAGCAGTCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 TCAAGCAATGGAGCAACAAGCGCGTCTTCGCGATGCTCTGAACGAAGCACTGAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGAGCAGTCAG 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT4G38 AACGAATCAGAGAGATCAAAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTCAACATCAGCCAGTTAAGACAGCAGCCACAACAGATGCAGCAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 AACGAATCAGAGAGATCAAAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTCAACATCAGCCAGTTAAGACAGCAGCCACAACAGATGCAGCAAC 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1610 1620 1630 1640 1650 AT4G38 AGTCTCATCAGCAGAACCACCAGAATGGAACCATGGCAACAAAATCTGAATCAAATGAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 AGTCTCATCAGCAGAACCACCAGAATGGAACCATGGCAACAAAATCTGAATCAAATGAA 1590 1600 1610 1620 1630 1640 10 20 30 40 50 60 70 80 90 100 AT4G38 MGDTEKCNSDMIQRLHSSFGTTSSSIPKNPISQLDLNPNFIRSSAPQFSKPFSDSGKRIGVPPSHPNLIPPTSPFSQIPTTRQPGSHNFNPGGANHSRSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 MGDTEKCNSDMIQRLHSSFGTTSSSIPKNPISQLDLNPNFIRSSAPQFSKPFSDSGKRIGVPPSHPNLIPPTSPFSQIPTTRQPGSHNFNPGGANHSRSM 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G38 SQPNSFFSFDSLPPLSPSPFRDHDVSMEDRDSGVFNSNHSLPPSPFTRCNSTSSSSLRVGESLPPRKSHRRSNSDIPSGFNSMPLIPPRPLERSFSGGEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 SQPNSFFSFDSLPPLSPSPFRDHDVSMEDRDSGVFNSNHSLPPSPFTRCNSTSSSSLRVGESLPPRKSHRRSNSDIPSGFNSMPLIPPRPLERSFSGGEC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G38 ADWSKSNPFVKKESSCEREGVGEREAMDDLFSAYMNLENIDVLNSSEADDSKNGNENRDDMESSRASGTKTNGSDTEGESSSVNESANNNMNSSGEKRES :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 ADWSKSNPFVKRESSCEREGVGEREAMDDLFSAYMNLENIDVLNSSEADDSKNGNENRDDMESSRASGTKTNGSDTEGESSSVNESANNNMNSSGEKRES 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G38 VKRRAAGGDIAPTTRHYRSVSVDSCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKIMANDKLAEMAMSDPKRVKR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 VKRRAAGGDIAPTTRHYRSVSVDSCFMEKLSFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKIMANDKLAEMAMSDPKRVK- 310 320 330 340 350 360 370 380 390 410 420 430 440 450 460 470 480 490 500 AT4G38 NDPLFRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNELKFRLQAMEQQARLRDALNEALNGEVQRLKLAIGESSQ ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 -----RILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGLTNQNNELKFRLQAMEQQARLRDALNEALNGEVQRLKLAIGESSQ 400 410 420 430 440 450 460 470 480 490 510 520 530 540 550 AT4G38 NESERSKMQSLNAEMFQQLNISQLRQQPQQMQQQSHQQNHQNGTMATKSESNE ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_035 NESERSKMQSLNAEMFQQLNISQLRQQPQQMQQQSHQQNHQNGTMATKSESNE 500 510 520 530 540 |