| Code name | RE_0370 | |||
|---|---|---|---|---|
| Locus | AT5G38800 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列92.70%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致/0424_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0370_462bp ATGAGTCTACCTTCGTACCTTTCCCATATTCCTACATCCTCACCATTTTGCGGACAAAACCCTAATCCATTCTTCAGCTTCGAAACTGGCGTGAACACTT CACAGTTCATGAGTTTGATCAGCAGCAACAACTCGACCTCAGATGAAGCAGAAGAGAATCATAAGGAGATAATAAATGAGAGGAAGCAAAAGAGGAAGAT ATCTAACAGAGAATCGGCAAGAAGATCGCGTATGAGGAAGCAGAGACAAGTGGATGAGCTTTGGTCACAGGTGATGTGGCTTAGGGATGAGAATCATCAG CTGCTTCGTAAGCTTAACTGCGTTTTAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGTTCAGCTCAAAGAGGAAACCACTGAGCTTAAGCAAATGATTA GTGATATGCAGCTTCAGAATCAGAGTCCTTTCTCTTGCATCAGAGACGACGACGACGTTGTA >RE_0370_translated MSLPSYLSHIPTSSPFCGQNPNPFFSFETGVNTSQFMSLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQ LLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQLQNQSPFSCIRDDDDVV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 460/495 (92.9%)（アミノ酸配列で153/165 (92.7%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G38 ATGCAACCATCCACCAACATTTTTAGCCTCCATGGTTGTCCACCTTCGTACCTTTCCCATATTCCTACATCCTCACCATTTTGCGGACAAAACCCTAATC
::: ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_037 -------------------------------ATG--AGTCTACCTTCGTACCTTTCCCATATTCCTACATCCTCACCATTTTGCGGACAAAACCCTAATC
10 20 30 40 50 60
110 120 130 140 150 160 170 180 190 200
AT5G38 CATTCTTCAGCTTCGAAACTGGCGTGAACACTTCACAGTTCATGAGTTTGATCAGCAGCAACAACTCGACCTCAGATGAAGCAGAAGAGAATCATAAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_037 CATTCTTCAGCTTCGAAACTGGCGTGAACACTTCACAGTTCATGAGTTTGATCAGCAGCAACAACTCGACCTCAGATGAAGCAGAAGAGAATCATAAGGA
70 80 90 100 110 120 130 140 150 160
210 220 230 240 250 260 270 280 290 300
AT5G38 GATAATAAATGAGAGGAAGCAAAAGAGGAAGATATCTAACAGAGAATCGGCAAGAAGATCGCGTATGAGGAAGCAGAGACAAGTGGATGAGCTTTGGTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_037 GATAATAAATGAGAGGAAGCAAAAGAGGAAGATATCTAACAGAGAATCGGCAAGAAGATCGCGTATGAGGAAGCAGAGACAAGTGGATGAGCTTTGGTCA
170 180 190 200 210 220 230 240 250 260
310 320 330 340 350 360 370 380 390 400
AT5G38 CAGGTGATGTGGCTTAGGGATGAGAATCATCAGCTGCTTCGTAAGCTTAACTGCGTTTTAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGTTCAGCTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_037 CAGGTGATGTGGCTTAGGGATGAGAATCATCAGCTGCTTCGTAAGCTTAACTGCGTTTTAGAGTCTCAAGAGAAGGTTATTGAAGAGAATGTTCAGCTCA
270 280 290 300 310 320 330 340 350 360
410 420 430 440 450 460 470 480 490
AT5G38 AAGAGGAAACCACTGAGCTTAAGCAAATGATTAGTGATATGCAGCTTCAGAATCAGAGTCCTTTCTCTTGCATCAGAGACGACGACGACGTTGTA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_037 AAGAGGAAACCACTGAGCTTAAGCAAATGATTAGTGATATGCAGCTTCAGAATCAGAGTCCTTTCTCTTGCATCAGAGACGACGACGACGTTGTA
370 380 390 400 410 420 430 440 450 460
10 20 30 40 50 60 70 80 90 100
AT5G38 MQPSTNIFSLHGCPPSYLSHIPTSSPFCGQNPNPFFSFETGVNTSQFMSLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWS
:: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_037 -------MSL----PSYLSHIPTSSPFCGQNPNPFFSFETGVNTSQFMSLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWS
10 20 30 40 50 60 70 80
110 120 130 140 150 160
AT5G38 QVMWLRDENHQLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQLQNQSPFSCIRDDDDVV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_037 QVMWLRDENHQLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQLQNQSPFSCIRDDDDVV
90 100 110 120 130 140 150
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