Code name | RE_0371 | |||
---|---|---|---|---|
Locus | AT5G44080 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
comment | (RE_03G03_x)->0314_アミノ酸配列100%一致/0420_アミノ酸配列100%一致 | |||
sequence |
>RE_0371_945bp ATGACGTCGTTTCAGGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGTCGCATCTCTTCTGCTTCTACTTCTTCTTCGTCTATAAGACCTC AACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGGAAGAAACGACGGATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTCTTAGATGCGTCGATTAATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACA ACGACGGCTTCTGATGTTGTGGATCACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGATTTGGAGAGAGATGGTATCAGGAGAAG GTAAAGGGATGAAGGAAGAGACGTCGGAAGAGATAATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGCGTCGGC GGAGGATTTGGATGTGAAGATTCCGGTGACGAATTACGGATTCGATCATTCTGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCA ATAGTTGCGTTTGGGAATGGTTTAGATGTTTACGGAGGAGGAGCTAGAGGGAAGAGAGCGAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGA GACAGAGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGAAGCTTTGGCTGCGAAGCTTGA GGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAAGAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAAG CAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGG >RE_0371_translated MTSFQVMRSSNSRNSDLSRRISSASTSSSSIRPQQQFRRDLTSVGYGGRNDGLYSSNSMTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITT TTASDVVDHGGGTETTRGGKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGS IVAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQKLMEFVIPVVEKPK QQPPRFLRRIRSLEW |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 944/945 (99.9%)(アミノ酸配列で100%)一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G44 ATGACGTCGTTTCAGGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGTCGCATCTCTTCTGCTTCTACTTCTTCTTCGTCTATAAGACCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 ATGACGTCGTTTCAGGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGTCGCATCTCTTCTGCTTCTACTTCTTCTTCGTCTATAAGACCTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G44 AACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGGAAGAAACGACGGATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 AACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGGAAGAAACGACGGATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G44 TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTCTTAGATGCGTCGATAAATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: RE_037 TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTCTTAGATGCGTCGATTAATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G44 ACGACGGCTTCTGATGTTGTGGATCACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGATTTGGAGAGAGATGGTATCAGGAGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 ACGACGGCTTCTGATGTTGTGGATCACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGATTTGGAGAGAGATGGTATCAGGAGAAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G44 GTAAAGGGATGAAGGAAGAGACGTCGGAAGAGATAATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGCGTCGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 GTAAAGGGATGAAGGAAGAGACGTCGGAAGAGATAATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGCGTCGGC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G44 GGAGGATTTGGATGTGAAGATTCCGGTGACGAATTACGGATTCGATCATTCTGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 GGAGGATTTGGATGTGAAGATTCCGGTGACGAATTACGGATTCGATCATTCTGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G44 ATAGTTGCGTTTGGGAATGGTTTAGATGTTTACGGAGGAGGAGCTAGAGGGAAGAGAGCGAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 ATAGTTGCGTTTGGGAATGGTTTAGATGTTTACGGAGGAGGAGCTAGAGGGAAGAGAGCGAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G44 GACAGAGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGAAGCTTTGGCTGCGAAGCTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 GACAGAGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGAAGCTTTGGCTGCGAAGCTTGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G44 GGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAAGAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 GGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAAGAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAAG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 AT5G44 CAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGG ::::::::::::::::::::::::::::::::::::::::::::: RE_037 CAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGG 910 920 930 940 10 20 30 40 50 60 70 80 90 100 AT5G44 MTSFQVMRSSNSRNSDLSRRISSASTSSSSIRPQQQFRRDLTSVGYGGRNDGLYSSNSMTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 MTSFQVMRSSNSRNSDLSRRISSASTSSSSIRPQQQFRRDLTSVGYGGRNDGLYSSNSMTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G44 TTASDVVDHGGGTETTRGGKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 TTASDVVDHGGGTETTRGGKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G44 IVAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQKLMEFVIPVVEKPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_037 IVAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQKLMEFVIPVVEKPK 210 220 230 240 250 260 270 280 290 300 310 AT5G44 QQPPRFLRRIRSLEW ::::::::::::::: RE_037 QQPPRFLRRIRSLEW 310 |