◆◆◆RE_0382 detail◆◆◆

Code name	RE_0382
Locus	AT1G30970
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0229_アミノ酸配列70%以上一致
sequence	>RE_0382_1101bp ATGGGTAAGAAGAAGAAGAGAGCTACAGAGAAGGTGTGGTGTTATTACTGCGATAGAGAGTTTGATGATGAGAAGATTCTTGTGCAGCATCAGAAAGCTA AGCACTTTAAGTGTCATGTCTGTCATAGGAAGCTTTCTACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAAGTTCC TAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAATTCCACCCCATGTCTTGACTGCTCATTATGGAGAAGAGGAGGAT GAGCCTCCAGCCAAAGTTGCAAAAGTTGAGATTCCTTCTGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAATGGTATATCCGCCTCAACAAGTAC CTGGTGCTGTACCTGCACGACCAATGTATTATCCGGGTCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCGCAACAATGGTA TCCTCAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACAACCACTTTTTCCTGTTCAAAATATGGGGATGACTCCAACTCCA ACCTCAGCTCCTGCCATACAACCATCACCAGTCACTGGAGTAACCCCTCCTGGAATTCCTACATCATCACCTGCAATGCCAGTTCCTCAACCTCTGTTCC CTGTTGTGAATAACAGCATTCCTTCTCAAGCTCCACCATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCATCTCATGCAGATGCTTTAGGATC AGCAGATGCTTATCCGCCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCT CCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCCTAATGGGGTCTATCTTGTATGGGATGATGAAGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAC CAAAATACAAAGTGCACGATGAAACCAGCCAGATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGCGTT T >RE_0382_translated MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHRKLSTASGMVIHVLQVHKENVTKVPNAKDGRDSTDIEIYGMQGIPPHVLTAHYGEEED EPPAKVAKVEIPSAPLGGVVPRPYGMVYPPQQVPGAVPARPMYYPGPPMRHPAPVWQMPPPRPQQWYPQNPALSVPPAAHLGYRPQPLFPVQNMGMTPTP TSAPAIQPSPVTGVTPPGIPTSSPAMPVPQPLFPVVNNSIPSQAPPFSAPLPVGGAQQPSHADALGSADAYPPNNSIPGGTNAHSYASGPNTSGPSIGPP PVIANKAPSNQPNGVYLVWDDEAMSMEERRMSLPKYKVHDETSQMNSINAAIDRRISESRLAGRMAF
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1097/1101 (99.6%)（アミノ酸配列で365/367 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G30 ATGGGTAAGAAGAAGAAGAGAGCTACAGAGAAGGTGTGGTGTTATTACTGCGATAGAGAGTTTGATGATGAGAAGATTCTTGTGCAGCATCAGAAAGCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 ATGGGTAAGAAGAAGAAGAGAGCTACAGAGAAGGTGTGGTGTTATTACTGCGATAGAGAGTTTGATGATGAGAAGATTCTTGTGCAGCATCAGAAAGCTA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G30 AGCACTTTAAGTGTCATGTCTGTCATAAGAAGCTTTCTACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAAGTTCC ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 AGCACTTTAAGTGTCATGTCTGTCATAGGAAGCTTTCTACAGCTAGTGGCATGGTGATTCATGTTCTTCAGGTTCATAAAGAGAATGTTACAAAAGTTCC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G30 TAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAATTCCACCCCATGTCTTGACTGCTCATTATGGAGAAGAAGAGGAT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: RE_038 TAATGCTAAAGACGGTCGAGATTCAACTGATATTGAAATATATGGAATGCAAGGAATTCCACCCCATGTCTTGACTGCTCATTATGGAGAAGAGGAGGAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G30 GAGCCTCCAGCCAAAGTTGCAAAAGTTGAGATTCCTTCTGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAATGGTATATCCGCCTCAACAAGTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 GAGCCTCCAGCCAAAGTTGCAAAAGTTGAGATTCCTTCTGCCCCTCTTGGTGGTGTAGTTCCTAGACCATATGGAATGGTATATCCGCCTCAACAAGTAC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G30 CTGGTGCTGTACCTGCACGACCAATGTATTATCCGGGTCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCGCAACAATGGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 CTGGTGCTGTACCTGCACGACCAATGTATTATCCGGGTCCTCCTATGCGTCATCCTGCTCCTGTATGGCAAATGCCACCTCCTCGTCCGCAACAATGGTA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G30 TCCTCAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACAACCACTTTTTCCTGTTCAAAATATGGGGATGACTCCAACTCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 TCCTCAAAATCCAGCTCTTTCTGTACCTCCAGCTGCCCATTTAGGGTATCGACCACAACCACTTTTTCCTGTTCAAAATATGGGGATGACTCCAACTCCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G30 ACCTCAGCTCCTGCCATACAACCATCACCAGTCACTGGAGTAACTCCTCCTGGAATTCCTACATCATCACCTGCAATGCCAGTTCCTCAACCTCTGTTCC :::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 ACCTCAGCTCCTGCCATACAACCATCACCAGTCACTGGAGTAACCCCTCCTGGAATTCCTACATCATCACCTGCAATGCCAGTTCCTCAACCTCTGTTCC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G30 CTGTTGTGAATAACAGCATTCCTTCTCAAGCTCCACCATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCATCTCATGCAGATGCTTTAGGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 CTGTTGTGAATAACAGCATTCCTTCTCAAGCTCCACCATTTTCTGCTCCTCTGCCTGTTGGTGGGGCTCAGCAACCATCTCATGCAGATGCTTTAGGATC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G30 AGCAGATGCTTATCCGCCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 AGCAGATGCTTATCCGCCTAACAATTCTATTCCAGGTGGGACTAATGCTCATTCTTATGCCTCTGGCCCAAACACTAGCGGTCCTTCAATTGGTCCACCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G30 CCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCCTAATGAGGTCTATCTTGTATGGGATGATGAAGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAC :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 CCTGTAATTGCAAACAAAGCTCCTAGCAATCAGCCTAATGGGGTCTATCTTGTATGGGATGATGAAGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G30 CAAAATACAAAGTGCACGATGAAACCAGCCAGATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGCGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 CAAAATACAAAGTGCACGATGAAACCAGCCAGATGAACTCGATAAATGCAGCGATAGACAGACGAATCTCAGAGAGTAGGCTTGCTGGGCGGATGGCGTT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G30 T : RE_038 T 10 20 30 40 50 60 70 80 90 100 AT1G30 MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTASGMVIHVLQVHKENVTKVPNAKDGRDSTDIEIYGMQGIPPHVLTAHYGEEED ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 MGKKKKRATEKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHRKLSTASGMVIHVLQVHKENVTKVPNAKDGRDSTDIEIYGMQGIPPHVLTAHYGEEED 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G30 EPPAKVAKVEIPSAPLGGVVPRPYGMVYPPQQVPGAVPARPMYYPGPPMRHPAPVWQMPPPRPQQWYPQNPALSVPPAAHLGYRPQPLFPVQNMGMTPTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 EPPAKVAKVEIPSAPLGGVVPRPYGMVYPPQQVPGAVPARPMYYPGPPMRHPAPVWQMPPPRPQQWYPQNPALSVPPAAHLGYRPQPLFPVQNMGMTPTP 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G30 TSAPAIQPSPVTGVTPPGIPTSSPAMPVPQPLFPVVNNSIPSQAPPFSAPLPVGGAQQPSHADALGSADAYPPNNSIPGGTNAHSYASGPNTSGPSIGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 TSAPAIQPSPVTGVTPPGIPTSSPAMPVPQPLFPVVNNSIPSQAPPFSAPLPVGGAQQPSHADALGSADAYPPNNSIPGGTNAHSYASGPNTSGPSIGPP 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 AT1G30 PVIANKAPSNQPNEVYLVWDDEAMSMEERRMSLPKYKVHDETSQMNSINAAIDRRISESRLAGRMAF ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_038 PVIANKAPSNQPNGVYLVWDDEAMSMEERRMSLPKYKVHDETSQMNSINAAIDRRISESRLAGRMAF 310 320 330 340 350 360

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