◆◆◆RE_0392 detail◆◆◆

Code name	RE_0392
Locus	AT2G02070
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0428_アミノ酸配列70%以上一致
sequence	>RE_0392_1806bp ATGGCTGCTTCTTCATCCTCCGCTGCTTCCTTCTTTGGAGTCCGACAAGATGACCAATCTCACCTCCTCCCACCTAATTCCTCCGCCGCTGCTCCTCCTC CTCCACCTCCTCACCACCAGGCACCGCTGCCACCGCTTGAAGCTCCACCGCAGAAAAAGAAGAGAAACCAACCAAGAACTCCAAATTCCGATGCGGAAGT GATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAGAATCTACAACTTCACCGA AGAGGACACAATCTTCCATGGAAGCTCAAACAGAAATCGACCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACC CGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGC TGTTCAATCGGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTCGGCGAGACAGTTTCATCACA CATAGAGCTCTCTGTGACGCGTTGGCTCAAGAGAGTGCGAGACACCCAACTTCATTGACTTCTTTGCCAAGTCATCACTTCCCGTACGGACAAAACACAA ACAACTCCAACAACAACGCTTCAAGCATGATCCTTGGTCTGTCCCACATGGGGGCCCCACAGAATCTTGATCACCAGCCCGGTGACGTTCTCCGTCTTGG AAGCGGAGGAGGAGGAGGAGGAGCCGCTTCACGCTCTTCTTCTGATCTCATTGCTGCGAATGCTTCAGGCTACTTCATGCAAGAGCAAAACCCTAGCTTT CATGATCAACAAGATCATCATCATCATCATCAACAAGGGTTTTTGGCTGGGAACAATAACATCAAGCAATCACCAATGAGTTTTCAACAGAATCTGATGC AGTTCTCACATGATAACCATAATTCTGCTCCCTCCAATGTCTTCAATCTCAGCTTCCTCTCCGGAAACAACGGAGTTACTTCTGCCACAAGTAACCCTAA TGCTGCCGCCGCTGCTGCTGTTTCTTCTGGTAATCTTATGATATCAAACCATTATGATGGCGAAAATGCTGTTGGAGGAGGAGGAGAAGGAAGCACTGGT CTCTTCCCTAACAATCTGATGAGCTCGGCAGATAGAATTAGCTCAGGATCAGTCCCTTCACTCTTTAGCTCATCAATGCAAAGTCCAAATTCAGCACCTC ACATGTCAGCCACTGCCCTTCTACAGAAAGCTGCTCAAATGGGTTCAACCTCAAGCAACAACAACAACGGAAGCAACACCAACAACAATAACAATGCCTC ATCGATCCTAAGAAGCTTTGGGAGTGGAATCTACGGAGAAAATGAGAGTAATCTTCAGGATTTGATGAATTCTTTCTCTAACCCCGGCGCAACGGGAAAC GTTAACGGAGTTGATTCTCCTTTTGGTTCGTACGGAGGAGTGAACAAAGGATTAAGCGCTGACAAACAGAGCATGACTAGAGACTTTCTTGGAGTTGGAC AGATCGTAAAAAGCATGAGTGGAAGCGGAGGGTTTCAACAACAGCAACAACAGCAACAGCAGCAACAACAACAACAACAACATGGAAATAGTAGAGAAAG AGTTGGCTCGTCGTCGGATTCCGCTGATAGAAGCAGCATGAATGTGAATACCGGAGGTGGTCCGGCAAGTACTTCACCACCTTATGGAATCCATCATGCG AGTTTC >RE_0392_translated MAASSSSAASFFGVRQDDQSHLLPPNSSAAAPPPPPPHHQAPLPPLEAPPQKKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHR RGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFIT HRALCDALAQESARHPTSLTSLPSHHFPYGQNTNNSNNNASSMILGLSHMGAPQNLDHQPGDVLRLGSGGGGGGAASRSSSDLIAANASGYFMQEQNPSF HDQQDHHHHHQQGFLAGNNNIKQSPMSFQQNLMQFSHDNHNSAPSNVFNLSFLSGNNGVTSATSNPNAAAAAAVSSGNLMISNHYDGENAVGGGGEGSTG LFPNNLMSSADRISSGSVPSLFSSSMQSPNSAPHMSATALLQKAAQMGSTSSNNNNGSNTNNNNNASSILRSFGSGIYGENESNLQDLMNSFSNPGATGN VNGVDSPFGSYGGVNKGLSADKQSMTRDFLGVGQIVKSMSGSGGFQQQQQQQQQQQQQQQHGNSRERVGSSSDSADRSSMNVNTGGGPASTSPPYGIHHA SF
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1805/1806 (99.9%)（アミノ酸配列で601/602 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G02 ATGGCTGCTTCTTCATCCTCCGCTGCTTCCTTCTTTGGAGTCCGACAAGATGACCAATCTCACCTCCTCCCACCTAATTCCTCCGCCGCTGCTCCTCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ATGGCTGCTTCTTCATCCTCCGCTGCTTCCTTCTTTGGAGTCCGACAAGATGACCAATCTCACCTCCTCCCACCTAATTCCTCCGCCGCTGCTCCTCCTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G02 CTCCACCTCCTCACCACCAGGCACCGCTGCCACCGCTTGAAGCTCCACCGCAGAAAAAGAAGAGAAACCAACCAAGAACTCCAAATTCCGATGCGGAAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 CTCCACCTCCTCACCACCAGGCACCGCTGCCACCGCTTGAAGCTCCACCGCAGAAAAAGAAGAGAAACCAACCAAGAACTCCAAATTCCGATGCGGAAGT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G02 GATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAGAATCTACAACTTCACCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 GATAGCTTTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAGAATCTACAACTTCACCGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G02 AGAGGACACAATCTTCCATGGAAGCTCAAACAGAAATCGACCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 AGAGGACACAATCTTCCATGGAAGCTCAAACAGAAATCGACCAAAGAAGTGAAGAGAAAAGTGTATCTTTGTCCGGAGCCCTCGTGCGTCCACCATGACC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G02 CGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 CGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAACATTATTACCGTAAACACGGTGAAAAGAAGTGGAAATGCGATAAATGCTCTAAGCGTTACGC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G02 TGTTCAATCGGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTCGGCGAGACAGTTTCATCACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 TGTTCAATCGGATTGGAAAGCTCACTCCAAGACTTGTGGTACCAAAGAGTATCGTTGTGACTGTGGTACACTCTTCTCTCGGCGAGACAGTTTCATCACA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G02 CATAGAGCTTTCTGTGACGCGTTGGCTCAAGAGAGTGCGAGACACCCAACTTCATTGACTTCTTTGCCAAGTCATCACTTCCCGTACGGACAAAACACAA ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 CATAGAGCTCTCTGTGACGCGTTGGCTCAAGAGAGTGCGAGACACCCAACTTCATTGACTTCTTTGCCAAGTCATCACTTCCCGTACGGACAAAACACAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G02 ACAACTCCAACAACAACGCTTCAAGCATGATCCTTGGTCTGTCCCACATGGGGGCCCCACAGAATCTTGATCACCAGCCCGGTGACGTTCTCCGTCTTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ACAACTCCAACAACAACGCTTCAAGCATGATCCTTGGTCTGTCCCACATGGGGGCCCCACAGAATCTTGATCACCAGCCCGGTGACGTTCTCCGTCTTGG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G02 AAGCGGAGGAGGAGGAGGAGGAGCCGCTTCACGCTCTTCTTCTGATCTCATTGCTGCGAATGCTTCAGGCTACTTCATGCAAGAGCAAAACCCTAGCTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 AAGCGGAGGAGGAGGAGGAGGAGCCGCTTCACGCTCTTCTTCTGATCTCATTGCTGCGAATGCTTCAGGCTACTTCATGCAAGAGCAAAACCCTAGCTTT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G02 CATGATCAACAAGATCATCATCATCATCATCAACAAGGGTTTTTGGCTGGGAACAATAACATCAAGCAATCACCAATGAGTTTTCAACAGAATCTGATGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 CATGATCAACAAGATCATCATCATCATCATCAACAAGGGTTTTTGGCTGGGAACAATAACATCAAGCAATCACCAATGAGTTTTCAACAGAATCTGATGC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G02 AGTTCTCACATGATAACCATAATTCTGCTCCCTCCAATGTCTTCAATCTCAGCTTCCTCTCCGGAAACAACGGAGTTACTTCTGCCACAAGTAACCCTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 AGTTCTCACATGATAACCATAATTCTGCTCCCTCCAATGTCTTCAATCTCAGCTTCCTCTCCGGAAACAACGGAGTTACTTCTGCCACAAGTAACCCTAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G02 TGCTGCCGCCGCTGCTGCTGTTTCTTCTGGTAATCTTATGATATCAAACCATTATGATGGCGAAAATGCTGTTGGAGGAGGAGGAGAAGGAAGCACTGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 TGCTGCCGCCGCTGCTGCTGTTTCTTCTGGTAATCTTATGATATCAAACCATTATGATGGCGAAAATGCTGTTGGAGGAGGAGGAGAAGGAAGCACTGGT 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G02 CTCTTCCCTAACAATCTGATGAGCTCGGCAGATAGAATTAGCTCAGGATCAGTCCCTTCACTCTTTAGCTCATCAATGCAAAGTCCAAATTCAGCACCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 CTCTTCCCTAACAATCTGATGAGCTCGGCAGATAGAATTAGCTCAGGATCAGTCCCTTCACTCTTTAGCTCATCAATGCAAAGTCCAAATTCAGCACCTC 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G02 ACATGTCAGCCACTGCCCTTCTACAGAAAGCTGCTCAAATGGGTTCAACCTCAAGCAACAACAACAACGGAAGCAACACCAACAACAATAACAATGCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ACATGTCAGCCACTGCCCTTCTACAGAAAGCTGCTCAAATGGGTTCAACCTCAAGCAACAACAACAACGGAAGCAACACCAACAACAATAACAATGCCTC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G02 ATCGATCCTAAGAAGCTTTGGGAGTGGAATCTACGGAGAAAATGAGAGTAATCTTCAGGATTTGATGAATTCTTTCTCTAACCCCGGCGCAACGGGAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ATCGATCCTAAGAAGCTTTGGGAGTGGAATCTACGGAGAAAATGAGAGTAATCTTCAGGATTTGATGAATTCTTTCTCTAACCCCGGCGCAACGGGAAAC 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G02 GTTAACGGAGTTGATTCTCCTTTTGGTTCGTACGGAGGAGTGAACAAAGGATTAAGCGCTGACAAACAGAGCATGACTAGAGACTTTCTTGGAGTTGGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 GTTAACGGAGTTGATTCTCCTTTTGGTTCGTACGGAGGAGTGAACAAAGGATTAAGCGCTGACAAACAGAGCATGACTAGAGACTTTCTTGGAGTTGGAC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT2G02 AGATCGTAAAAAGCATGAGTGGAAGCGGAGGGTTTCAACAACAGCAACAACAGCAACAGCAGCAACAACAACAACAACAACATGGAAATAGTAGAGAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 AGATCGTAAAAAGCATGAGTGGAAGCGGAGGGTTTCAACAACAGCAACAACAGCAACAGCAGCAACAACAACAACAACAACATGGAAATAGTAGAGAAAG 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT2G02 AGTTGGCTCGTCGTCGGATTCCGCTGATAGAAGCAGCATGAATGTGAATACCGGAGGTGGTCCGGCAAGTACTTCACCACCTTATGGAATCCATCATGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 AGTTGGCTCGTCGTCGGATTCCGCTGATAGAAGCAGCATGAATGTGAATACCGGAGGTGGTCCGGCAAGTACTTCACCACCTTATGGAATCCATCATGCG 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT2G02 AGTTTC :::::: RE_039 AGTTTC 10 20 30 40 50 60 70 80 90 100 AT2G02 MAASSSSAASFFGVRQDDQSHLLPPNSSAAAPPPPPPHHQAPLPPLEAPPQKKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 MAASSSSAASFFGVRQDDQSHLLPPNSSAAAPPPPPPHHQAPLPPLEAPPQKKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHR 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G02 RGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 RGHNLPWKLKQKSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFIT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G02 HRAFCDALAQESARHPTSLTSLPSHHFPYGQNTNNSNNNASSMILGLSHMGAPQNLDHQPGDVLRLGSGGGGGGAASRSSSDLIAANASGYFMQEQNPSF ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 HRALCDALAQESARHPTSLTSLPSHHFPYGQNTNNSNNNASSMILGLSHMGAPQNLDHQPGDVLRLGSGGGGGGAASRSSSDLIAANASGYFMQEQNPSF 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G02 HDQQDHHHHHQQGFLAGNNNIKQSPMSFQQNLMQFSHDNHNSAPSNVFNLSFLSGNNGVTSATSNPNAAAAAAVSSGNLMISNHYDGENAVGGGGEGSTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 HDQQDHHHHHQQGFLAGNNNIKQSPMSFQQNLMQFSHDNHNSAPSNVFNLSFLSGNNGVTSATSNPNAAAAAAVSSGNLMISNHYDGENAVGGGGEGSTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G02 LFPNNLMSSADRISSGSVPSLFSSSMQSPNSAPHMSATALLQKAAQMGSTSSNNNNGSNTNNNNNASSILRSFGSGIYGENESNLQDLMNSFSNPGATGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 LFPNNLMSSADRISSGSVPSLFSSSMQSPNSAPHMSATALLQKAAQMGSTSSNNNNGSNTNNNNNASSILRSFGSGIYGENESNLQDLMNSFSNPGATGN 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G02 VNGVDSPFGSYGGVNKGLSADKQSMTRDFLGVGQIVKSMSGSGGFQQQQQQQQQQQQQQQHGNSRERVGSSSDSADRSSMNVNTGGGPASTSPPYGIHHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 VNGVDSPFGSYGGVNKGLSADKQSMTRDFLGVGQIVKSMSGSGGFQQQQQQQQQQQQQQQHGNSRERVGSSSDSADRSSMNVNTGGGPASTSPPYGIHHA 510 520 530 540 550 560 570 580 590 600 AT2G02 SF :: RE_039 SF

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