◆◆◆RE_0393 detail◆◆◆

Code name	RE_0393
Locus	AT2G02080
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0311_アミノ酸配列70%以上一致
sequence	>RE_0393_1548bp ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCTCTGCTCAGCCTTTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTA ACCGGAAAGATACTTTTATGTCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCCGGAAACCCAAATCCTGATGC GGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGCGATGTATGTAACAAAGGGTTCCAAAGAGAACAAAATCTACAGCTT CACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAGAGGAAAGTGTATCTTTGTCCGGAGCCAACGTGCGTTCACC ATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGTGAGAAATGTTCTAAGCG TTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTAC ATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTGAGCTTTACGTCAATGACAGCTGCTAGTAGTGGTGTCGGCT CCGGCGGAATCTACGGGAGACTTGGCGGTGGCAGTGCTCTCTCACACCACCATTTGAGTGACCATCCAAATTTTGGATTTAACCCTCTCGCGGGTTACAA TCTGAACATTGCATCTTCTGATAATAGGAGAGACTTTATTCCGCAATCATCAAACCCTAACTTCCTAATCCAAAGCGCTTCGAGCCAAGGAATGTTGAAT ACAACGCCAAACAACAATAACCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGATCCAGTCGACAACATCAACCTCAAGAGTAGCGGCACCAACA ACAGCTTCTTCAACCTCGGATTCTTTCAAGAAAACACGAAGAACTCAGAGACGAGTCTTCCTTCTCTATATAGCACCGACGTTCTTGTTCATCACCGTGA AGAAAACTTGAACGCGGGTTCTAACGTGTCAGCCACGGCACTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGACCCATCTGCTTTGTTC AGAGGCTTAGCTTCTTCGTCTAACTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGACGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTC TAATGAACTCATTAGCCGCCGTTAATGGAGGTGGCGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGAAATATGAGCGGCTCGGACAA GTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGAAATGTAAATCGCGGTGGTGGTGGTGGTGGTCGCGGCAGTGCTCGTGGCGGAGTTTCTTTG GATGGTGAGGCGAAGTTTCCTGAGCAAAATTATCCATTTGGAAGAGGT >RE_0393_translated MSSSSYNTSVIPSSSSSAQPFFITSSGTGDNDFNRKDTFMSMIQQPNSSAPPPKKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQL HRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSY ITHRAFCDALIQETARNPTVSFTSMTAASSGVGSGGIYGRLGGGSALSHHHLSDHPNFGFNPLAGYNLNIASSDNRRDFIPQSSNPNFLIQSASSQGMLN TTPNNNNQSFMNQHGLIQFDPVDNINLKSSGTNNSFFNLGFFQENTKNSETSLPSLYSTDVLVHHREENLNAGSNVSATALLQKATQMGSVTSNDPSALF RGLASSSNSSSVIANHFGGGRIMENDNNGNLQGLMNSLAAVNGGGGSGGSIFDVQFGDNGNMSGSDKLTLDFLGVGGMVRNVNRGGGGGGRGSARGGVSL DGEAKFPEQNYPFGRG
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1546/1548 (99.9%)（アミノ酸配列で515/516 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G02 ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCTCTGCTCAGCCTTTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ATGTCGTCATCATCATATAACACAAGCGTTATTCCTTCATCATCATCCTCTGCTCAGCCTTTCTTCATCACCAGCTCCGGCACCGGAGATAACGACTTTA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G02 ACCGGAAAGATACTTTTATGTCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCCGGAAACCCAAATCCTGATGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ACCGGAAAGATACTTTTATGTCAATGATTCAACAACCTAACTCCTCAGCTCCACCACCCAAGAAACGAAGAAACCAACCCGGAAACCCAAATCCTGATGC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G02 GGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGCGATGTATGTAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: RE_039 GGAAGTGGTAGCATTATCTCCAAAGACACTAATGGCTACAAACAGATTCATATGCGATGTATGTAACAAAGGGTTCCAAAGAGAACAAAATCTACAGCTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G02 CACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAGAGGAAAGTGTATCTTTGTCCGGAGCCAACGTGCGTTCACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 CACCGAAGAGGACACAATCTCCCATGGAAGCTGAAACAAAAATCAACCAAAGAAGTGAAGAGGAAAGTGTATCTTTGTCCGGAGCCAACGTGCGTTCACC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G02 ATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGTGAGAAATGTTCTAAGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ATGACCCGTCACGTGCTCTCGGAGACCTCACCGGAATCAAGAAGCATTATTACCGTAAACATGGCGAAAAGAAGTGGAAATGTGAGAAATGTTCTAAGCG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G02 TTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 TTACGCTGTTCAATCAGATTGGAAAGCTCACTCTAAGACTTGTGGTACTAAAGAGTATCGATGTGACTGTGGTACCATCTTCTCTAGACGTGATAGTTAC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G02 ATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTGAGCTTTACGTCAATGACAGCTGCTAGTAGTGGTGTCGGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ATCACGCATAGGGCTTTCTGCGATGCATTGATACAAGAGACTGCAAGAAACCCTACCGTGAGCTTTACGTCAATGACAGCTGCTAGTAGTGGTGTCGGCT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G02 CCGGCGGAATCTACGGGAGACTTGGCGGTGGCAGTGCTCTCTCACACCACCATTTGAGTGACCATCCAAATTTTGGATTTAACCCTCTCGTGGGTTACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: RE_039 CCGGCGGAATCTACGGGAGACTTGGCGGTGGCAGTGCTCTCTCACACCACCATTTGAGTGACCATCCAAATTTTGGATTTAACCCTCTCGCGGGTTACAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G02 TCTGAACATTGCATCTTCTGATAATAGGAGAGACTTTATTCCGCAATCATCAAACCCTAACTTCCTAATCCAAAGCGCTTCGAGCCAAGGAATGTTGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 TCTGAACATTGCATCTTCTGATAATAGGAGAGACTTTATTCCGCAATCATCAAACCCTAACTTCCTAATCCAAAGCGCTTCGAGCCAAGGAATGTTGAAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G02 ACAACGCCAAACAACAATAACCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGATCCAGTCGACAACATCAACCTCAAGAGTAGCGGCACCAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ACAACGCCAAACAACAATAACCAGAGTTTCATGAACCAGCATGGTCTGATACAGTTTGATCCAGTCGACAACATCAACCTCAAGAGTAGCGGCACCAACA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G02 ACAGCTTCTTCAACCTCGGATTCTTTCAAGAAAACACGAAGAACTCAGAGACGAGTCTTCCTTCTCTATATAGCACCGACGTTCTTGTTCATCACCGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 ACAGCTTCTTCAACCTCGGATTCTTTCAAGAAAACACGAAGAACTCAGAGACGAGTCTTCCTTCTCTATATAGCACCGACGTTCTTGTTCATCACCGTGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G02 AGAAAACTTGAACGCGGGTTCTAACGTGTCAGCCACGGCACTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGACCCATCTGCTTTGTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 AGAAAACTTGAACGCGGGTTCTAACGTGTCAGCCACGGCACTACTTCAGAAAGCTACACAAATGGGTTCAGTCACAAGCAACGACCCATCTGCTTTGTTC 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G02 AGAGGCTTAGCTTCTTCGTCTAACTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGACGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 AGAGGCTTAGCTTCTTCGTCTAACTCATCAAGTGTTATCGCTAATCACTTTGGTGGAGGACGAATTATGGAGAATGATAATAATGGAAACCTTCAAGGTC 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G02 TAATGAACTCATTAGCCGCCGTTAATGGAGGTGGCGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGAAATATGAGCGGCTCGGACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 TAATGAACTCATTAGCCGCCGTTAATGGAGGTGGCGGATCCGGTGGCAGTATCTTCGACGTTCAATTTGGAGACAATGGAAATATGAGCGGCTCGGACAA 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G02 GTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGAAATGTAAATCGCGGTGGTGGTGGTGGTGGTCGCGGCAGTGCTCGTGGCGGAGTTTCTTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 GTTAACGTTAGATTTTCTTGGAGTTGGAGGAATGGTGAGAAATGTAAATCGCGGTGGTGGTGGTGGTGGTCGCGGCAGTGCTCGTGGCGGAGTTTCTTTG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 AT2G02 GATGGTGAGGCGAAGTTTCCTGAGCAAAATTATCCATTTGGAAGAGGT :::::::::::::::::::::::::::::::::::::::::::::::: RE_039 GATGGTGAGGCGAAGTTTCCTGAGCAAAATTATCCATTTGGAAGAGGT 1510 1520 1530 1540 10 20 30 40 50 60 70 80 90 100 AT2G02 MSSSSYNTSVIPSSSSSAQPFFITSSGTGDNDFNRKDTFMSMIQQPNSSAPPPKKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 MSSSSYNTSVIPSSSSSAQPFFITSSGTGDNDFNRKDTFMSMIQQPNSSAPPPKKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G02 HRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 HRRGHNLPWKLKQKSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSRRDSY 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G02 ITHRAFCDALIQETARNPTVSFTSMTAASSGVGSGGIYGRLGGGSALSHHHLSDHPNFGFNPLVGYNLNIASSDNRRDFIPQSSNPNFLIQSASSQGMLN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: RE_039 ITHRAFCDALIQETARNPTVSFTSMTAASSGVGSGGIYGRLGGGSALSHHHLSDHPNFGFNPLAGYNLNIASSDNRRDFIPQSSNPNFLIQSASSQGMLN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G02 TTPNNNNQSFMNQHGLIQFDPVDNINLKSSGTNNSFFNLGFFQENTKNSETSLPSLYSTDVLVHHREENLNAGSNVSATALLQKATQMGSVTSNDPSALF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 TTPNNNNQSFMNQHGLIQFDPVDNINLKSSGTNNSFFNLGFFQENTKNSETSLPSLYSTDVLVHHREENLNAGSNVSATALLQKATQMGSVTSNDPSALF 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G02 RGLASSSNSSSVIANHFGGGRIMENDNNGNLQGLMNSLAAVNGGGGSGGSIFDVQFGDNGNMSGSDKLTLDFLGVGGMVRNVNRGGGGGGRGSARGGVSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_039 RGLASSSNSSSVIANHFGGGRIMENDNNGNLQGLMNSLAAVNGGGGSGGSIFDVQFGDNGNMSGSDKLTLDFLGVGGMVRNVNRGGGGGGRGSARGGVSL 410 420 430 440 450 460 470 480 490 500 510 AT2G02 DGEAKFPEQNYPFGRG :::::::::::::::: RE_039 DGEAKFPEQNYPFGRG 510

このページのTOPに戻る