| Code name | RE_0399 | |||
|---|---|---|---|---|
| Locus | AT2G28200 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.00%一致 | |||
| comment | 0229_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_0399_852bp ATGGGTCAAGATGAGGTTGGGAGTGATCAGACGCAAATCATAAAAGGGAAACGTACGAAGCGACAAAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGA CAACAGTGACTTCGACAAGTTCATCGGCCGGTGGAAGTGGAGGAGAAAGAGCTGTTTCAAATGAATACAACTCGGCGGTTTCGTCTCCGGTGACTACTGA TTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCATGTTAGCTCGTGGGACAGTTCTTCCATCGCCGGATCTCAAGAACTCGAGAAAAATTCAT CAGAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTACGAGTGTAAAACGTGTAACCGGACGTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCGA GCCACAAGAAGCCGAGGACGTCGACTGAGGAAAAGACTAGACTACCCCTGACGCAACCCAAGTCTAGTGCATCAGAAGAAGGGCAAAACAGTCATTTCAA AGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCATCAACAAGGCAAACAAAGTACACGAGTGTTCCATCTGCGGTTCTGAGTTCACTTCCGGG CAAGCTCTCGGTGGTCACATGAGGCGGCACAGGACAGCCGTAACCACGATTAGCCCCGTTGCAGCCACCGCAGAAGTAAGCAGAAACAGTACAGAGGAAG AGATTGAGATCAATATAGGCCGTTCGATGGAACAGCAGAGGAAATATCTACCGTTGGATCTTAATCTACCAGCACCAGAAGATGATCTAAGAGAGTCAAA GTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGATTGTCATTAC >RE_0399_translated MGQDEVGSDQTQIIKGKRTKRQRSSSTFVVTAATTVTSTSSSAGGSGGERAVSNEYNSAVSSPVTTDCTQEEEDMAICLIMLARGTVLPSPDLKNSRKIH QKISSENSSFYVYECKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHECSICGSEFTSG QALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYLPLDLNLPAPEDDLRESKFQGIVFSATPALIDCHY |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 850/858 (99.1%)（アミノ酸配列で283/286 (99.0%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G28 ATGATGATGGGTCAAGATGAGGTTGGGAGTGATCAGACGCAAATCATAAAAGGGAAACGTACGAAGCGACAAAGATCGTCTTCGACGTTTGTGGTGACGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 ------ATGGGTCAAGATGAGGTTGGGAGTGATCAGACGCAAATCATAAAAGGGAAACGTACGAAGCGACAAAGATCGTCTTCGACGTTTGTGGTGACGG
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT2G28 CGGCGACAACAGTGACTTCAACAAGTTCATCGGCCGGTGGAAGTGGAGGAGAAAGAGCTGTTTCAGATGAATACAACTCGGCGGTTTCGTCTCCGGTGAC
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
RE_039 CGGCGACAACAGTGACTTCGACAAGTTCATCGGCCGGTGGAAGTGGAGGAGAAAGAGCTGTTTCAAATGAATACAACTCGGCGGTTTCGTCTCCGGTGAC
100 110 120 130 140 150 160 170 180 190
210 220 230 240 250 260 270 280 290 300
AT2G28 TACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCATGTTAGCTCGTGGGACAGTTCTTCCATCGCCGGATCTCAAGAACTCGAGAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 TACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCATGTTAGCTCGTGGGACAGTTCTTCCATCGCCGGATCTCAAGAACTCGAGAAAA
200 210 220 230 240 250 260 270 280 290
310 320 330 340 350 360 370 380 390 400
AT2G28 ATTCATCAGAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTACGAGTGTAAAACGTGTAACCGGACGTTTTCGTCGTTCCAAGCACTTGGTGGACACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 ATTCATCAGAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTACGAGTGTAAAACGTGTAACCGGACGTTTTCGTCGTTCCAAGCACTTGGTGGACACA
300 310 320 330 340 350 360 370 380 390
410 420 430 440 450 460 470 480 490 500
AT2G28 GAGCGAGCCACAAGAAGCCGAGGACGTCGACTGAGGAAAAGACTAGACTACCCCTGACGCAACCCAAGTCTAGTGCATCAGAAGAAGGGCAAAACAGTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 GAGCGAGCCACAAGAAGCCGAGGACGTCGACTGAGGAAAAGACTAGACTACCCCTGACGCAACCCAAGTCTAGTGCATCAGAAGAAGGGCAAAACAGTCA
400 410 420 430 440 450 460 470 480 490
510 520 530 540 550 560 570 580 590 600
AT2G28 TTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCATCAACAAGGCAAACAAAGTACACGAGTGTTCCATCTGCGGTTCTGAGTTCACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 TTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCATCAACAAGGCAAACAAAGTACACGAGTGTTCCATCTGCGGTTCTGAGTTCACT
500 510 520 530 540 550 560 570 580 590
610 620 630 640 650 660 670 680 690 700
AT2G28 TCCGGGCAAGCTCTCGGTGGTCACATGAGGCGGCACAGGACAGCCGTAACCACGATTAGCCCCGTTGCAGCCACCGCAGAAGTAAGCAGAAACAGTACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 TCCGGGCAAGCTCTCGGTGGTCACATGAGGCGGCACAGGACAGCCGTAACCACGATTAGCCCCGTTGCAGCCACCGCAGAAGTAAGCAGAAACAGTACAG
600 610 620 630 640 650 660 670 680 690
710 720 730 740 750 760 770 780 790 800
AT2G28 AGGAAGAGATTGAGATCAATATAGGCCGTTCGATGGAACAGCAGAGGAAATATCTACCGTTGGATCTTAATCTACCAGCACCAGAAGATGATCTAAGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 AGGAAGAGATTGAGATCAATATAGGCCGTTCGATGGAACAGCAGAGGAAATATCTACCGTTGGATCTTAATCTACCAGCACCAGAAGATGATCTAAGAGA
700 710 720 730 740 750 760 770 780 790
810 820 830 840 850
AT2G28 GTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGATTGTCATTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 GTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGATTGTCATTAC
800 810 820 830 840 850
10 20 30 40 50 60 70 80 90 100
AT2G28 MMMGQDEVGSDQTQIIKGKRTKRQRSSSTFVVTAATTVTSTSSSAGGSGGERAVSDEYNSAVSSPVTTDCTQEEEDMAICLIMLARGTVLPSPDLKNSRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
RE_039 --MGQDEVGSDQTQIIKGKRTKRQRSSSTFVVTAATTVTSTSSSAGGSGGERAVSNEYNSAVSSPVTTDCTQEEEDMAICLIMLARGTVLPSPDLKNSRK
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT2G28 IHQKISSENSSFYVYECKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHECSICGSEFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 IHQKISSENSSFYVYECKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRLPLTQPKSSASEEGQNSHFKVSGSALASQASNIINKANKVHECSICGSEFT
100 110 120 130 140 150 160 170 180 190
210 220 230 240 250 260 270 280
AT2G28 SGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYLPLDLNLPAPEDDLRESKFQGIVFSATPALIDCHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_039 SGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYLPLDLNLPAPEDDLRESKFQGIVFSATPALIDCHY
200 210 220 230 240 250 260 270 280
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