| Code name | RE_03A04 | |||
|---|---|---|---|---|
| Locus | AT4G17500 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03A04_564bp ATGTTAGTTTACGGTATCCTCAACGACGCCTTTCACGGCGGTTGGGAGCCGTCTTCTTCGTCTTCCGACGAAGATCGTAGCTCTTTCCCGAGTGTTAAGA TCGAGACTCCGGAGAGTTTCGCGGCGGTGGATTCTGTTCCGGTCAAGAAGGAGAAGACGAGTCCTGTTTCGGCGGCGGTGACGGCGGCGAAGGGAAAGCA TTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGACCCGGCGAAGAACGGAGCTAGGGTTTGGTTAGGAACGTTTGAGACG GCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACCCG ACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTTTCTTCTTCTAACGAGAACGGAGCTCCGAAGAAGAGGAGAACGGTGGCCGCCGGTGGTGGAATGGA TAAGGGATTGACGGTGAAGTGCGAGGTTGTTGAAGTGGCACGTGGCGATCGTTTATTGGTTTTA >RE_03A04_translated MLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET AEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRRTVAAGGGMDKGLTVKCEVVEVARGDRLLVL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 564/804 (70.1%)（アミノ酸配列で188/268 (70.1%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G17 ATGTCGATGACGGCGGATTCTCAATCTGATTATGCTTTTCTTGAGTCCATACGACGACACTTACTAGGAGAATCGGAGCCGATACTCAGTGAGTCGACAG
RE_03A ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190 200
AT4G17 CGAGTTCGGTTACTCAATCTTGTGTAACCGGTCAGAGCATTAAACCGGTGTACGGACGAAACCCTAGCTTTAGCAAACTGTATCCTTGCTTCACCGAGAG
RE_03A ----------------------------------------------------------------------------------------------------
210 220 230 240 250 260 270 280 290 300
AT4G17 CTGGGGAGATTTGCCGTTGAAAGAAAACGATTCTGAGGATATGTTAGTTTACGGTATCCTCAACGACGCCTTTCACGGCGGTTGGGAGCCGTCTTCTTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A ----------------------------------------ATGTTAGTTTACGGTATCCTCAACGACGCCTTTCACGGCGGTTGGGAGCCGTCTTCTTCG
10 20 30 40 50 60
310 320 330 340 350 360 370 380 390 400
AT4G17 TCTTCCGACGAAGATCGTAGCTCTTTCCCGAGTGTTAAGATCGAGACTCCGGAGAGTTTCGCGGCGGTGGATTCTGTTCCGGTCAAGAAGGAGAAGACGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A TCTTCCGACGAAGATCGTAGCTCTTTCCCGAGTGTTAAGATCGAGACTCCGGAGAGTTTCGCGGCGGTGGATTCTGTTCCGGTCAAGAAGGAGAAGACGA
70 80 90 100 110 120 130 140 150 160
410 420 430 440 450 460 470 480 490 500
AT4G17 GTCCTGTTTCGGCGGCGGTGACGGCGGCGAAGGGAAAGCATTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGACCCGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A GTCCTGTTTCGGCGGCGGTGACGGCGGCGAAGGGAAAGCATTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGACCCGGC
170 180 190 200 210 220 230 240 250 260
510 520 530 540 550 560 570 580 590 600
AT4G17 GAAGAACGGAGCTAGGGTTTGGTTAGGAACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A GAAGAACGGAGCTAGGGTTTGGTTAGGAACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCT
270 280 290 300 310 320 330 340 350 360
610 620 630 640 650 660 670 680 690 700
AT4G17 TTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACCCGACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTTTCTTCTTCTAACGAGAACGGAGCTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A TTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACCCGACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTTTCTTCTTCTAACGAGAACGGAGCTC
370 380 390 400 410 420 430 440 450 460
710 720 730 740 750 760 770 780 790 800
AT4G17 CGAAGAAGAGGAGAACGGTGGCCGCCGGTGGTGGAATGGATAAGGGATTGACGGTGAAGTGCGAGGTTGTTGAAGTGGCACGTGGCGATCGTTTATTGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A CGAAGAAGAGGAGAACGGTGGCCGCCGGTGGTGGAATGGATAAGGGATTGACGGTGAAGTGCGAGGTTGTTGAAGTGGCACGTGGCGATCGTTTATTGGT
470 480 490 500 510 520 530 540 550 560
AT4G17 TTTA
::::
RE_03A TTTA
10 20 30 40 50 60 70 80 90 100
AT4G17 MSMTADSQSDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSS
::::::::::::::::::::
RE_03A --------------------------------------------------------------------------------MLVYGILNDAFHGGWEPSSS
10 20
110 120 130 140 150 160 170 180 190 200
AT4G17 SSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A SSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA
30 40 50 60 70 80 90 100 110 120
210 220 230 240 250 260
AT4G17 LLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRRTVAAGGGMDKGLTVKCEVVEVARGDRLLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03A LLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRRTVAAGGGMDKGLTVKCEVVEVARGDRLLVL
130 140 150 160 170 180
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