| Code name | RE_03B04 | |||
|---|---|---|---|---|
| Locus | AT2G18380 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03B04_621bp ATGGGATACCAAACAAACTCTAATTTCTCCATGTTTTTTTCCTCGGAAAATGACGACCAAAACCACCACAACTACGATCCTTATAATAATTTCTCTTCAT CAACTTCTGTTGATTGCACTCTCTCACTTGGAACACCCTCTACTCGTCTCGACGACCACCATAGATTTTCTTCTGCTAATTCTAACAACATCTCCGGCGA CTTTTATATTCACGGAGGAAACGCTAAGACTTCTTCGTACAAGAAGGGTGGTGTTGCTCATAGCCTACCTCGCCGTTGTGCTAGCTGCGACACCACTTCA ACTCCTCTATGGAGAAACGGACCAAAAGGACCTAAGTCGTTATGTAACGCGTGTGGAATCCGATTCAAGAAAGAGGAGAGGCGTGCGACGGCCAGAAACT TAACGATCTCCGGTGGAGGTTCATCAGCGGCAGAAGTCCCAGTAGAGAATTCGTACAACGGAGGTGGAAACTATTACAGTCATCATCATCATCACTATGC CTCGTCGTCGCCGTCGTGGGCTCATCAGAACACACAAAGAGTTCCATATTTCTCACCGGTTCCGGAGATGGAATATCCCTACGTGGATAACGTCACGGCT TCTTCTTTTATGTCTTGGAAT >RE_03B04_translated MGYQTNSNFSMFFSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDDHHRFSSANSNNISGDFYIHGGNAKTSSYKKGGVAHSLPRRCASCDTTS TPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAHQNTQRVPYFSPVPEMEYPYVDNVTA SSFMSWN |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 621/624 (99.5%)（アミノ酸配列で207/208 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G18 ATGATGGGATACCAAACAAACTCTAATTTCTCCATGTTTTTTTCCTCGGAAAATGACGACCAAAACCACCACAACTACGATCCTTATAATAATTTCTCTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B ---ATGGGATACCAAACAAACTCTAATTTCTCCATGTTTTTTTCCTCGGAAAATGACGACCAAAACCACCACAACTACGATCCTTATAATAATTTCTCTT
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT2G18 CATCAACTTCTGTTGATTGCACTCTCTCACTTGGAACACCCTCTACTCGTCTCGACGACCACCATAGATTTTCTTCTGCTAATTCTAACAACATCTCCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B CATCAACTTCTGTTGATTGCACTCTCTCACTTGGAACACCCTCTACTCGTCTCGACGACCACCATAGATTTTCTTCTGCTAATTCTAACAACATCTCCGG
100 110 120 130 140 150 160 170 180 190
210 220 230 240 250 260 270 280 290 300
AT2G18 CGACTTTTATATTCACGGAGGAAACGCTAAGACTTCTTCGTACAAGAAGGGTGGTGTTGCTCATAGCCTACCTCGCCGTTGTGCTAGCTGCGACACCACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B CGACTTTTATATTCACGGAGGAAACGCTAAGACTTCTTCGTACAAGAAGGGTGGTGTTGCTCATAGCCTACCTCGCCGTTGTGCTAGCTGCGACACCACT
200 210 220 230 240 250 260 270 280 290
310 320 330 340 350 360 370 380 390 400
AT2G18 TCAACTCCTCTATGGAGAAACGGACCAAAAGGACCTAAGTCGTTATGTAACGCGTGTGGAATCCGATTCAAGAAAGAGGAGAGGCGTGCGACGGCCAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B TCAACTCCTCTATGGAGAAACGGACCAAAAGGACCTAAGTCGTTATGTAACGCGTGTGGAATCCGATTCAAGAAAGAGGAGAGGCGTGCGACGGCCAGAA
300 310 320 330 340 350 360 370 380 390
410 420 430 440 450 460 470 480 490 500
AT2G18 ACTTAACGATCTCCGGTGGAGGTTCATCAGCGGCAGAAGTCCCAGTAGAGAATTCGTACAACGGAGGTGGAAACTATTACAGTCATCATCATCATCACTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B ACTTAACGATCTCCGGTGGAGGTTCATCAGCGGCAGAAGTCCCAGTAGAGAATTCGTACAACGGAGGTGGAAACTATTACAGTCATCATCATCATCACTA
400 410 420 430 440 450 460 470 480 490
510 520 530 540 550 560 570 580 590 600
AT2G18 TGCCTCGTCGTCGCCGTCGTGGGCTCATCAGAACACACAAAGAGTTCCATATTTCTCACCGGTTCCGGAGATGGAATATCCCTACGTGGATAACGTCACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B TGCCTCGTCGTCGCCGTCGTGGGCTCATCAGAACACACAAAGAGTTCCATATTTCTCACCGGTTCCGGAGATGGAATATCCCTACGTGGATAACGTCACG
500 510 520 530 540 550 560 570 580 590
610 620
AT2G18 GCTTCTTCTTTTATGTCTTGGAAT
::::::::::::::::::::::::
RE_03B GCTTCTTCTTTTATGTCTTGGAAT
600 610 620
10 20 30 40 50 60 70 80 90 100
AT2G18 MMGYQTNSNFSMFFSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDDHHRFSSANSNNISGDFYIHGGNAKTSSYKKGGVAHSLPRRCASCDTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B -MGYQTNSNFSMFFSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDDHHRFSSANSNNISGDFYIHGGNAKTSSYKKGGVAHSLPRRCASCDTT
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT2G18 STPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAHQNTQRVPYFSPVPEMEYPYVDNVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03B STPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGGGSSAAEVPVENSYNGGGNYYSHHHHHYASSSPSWAHQNTQRVPYFSPVPEMEYPYVDNVT
100 110 120 130 140 150 160 170 180 190
AT2G18 ASSFMSWN
::::::::
RE_03B ASSFMSWN
200
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