| Code name | RE_03D01 | |||
|---|---|---|---|---|
| Locus | AT1G44830 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03D01_633bp ATGGTGAAAACACTTCAAAAGACACCAAAGAGAATGTCATCTCCATCATCATCATCTTCATCATCCTCATCAACATCATCATCATCCATAAGGATGAAGA AGTACAAGGGAGTGAGAATGAGAAGTTGGGGCTCATGGGTTTCAGAGATCAGAGCTCCTAATCAAAAGACAAGGATCTGGCTTGGTTCTTACTCAACTGC TGAAGCCGCGGCTAGAGCCTACGACGCAGCACTCCTATGTCTTAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCAACTTCTCTCTACCAT ATTATCAACAATGGTGATAACAACAATGACATGTCCCCTAAGTCTATACAAAGAGTAGCAGCTGCAGCTGCTGCTGCCAACACAGATCCTTCCTCATCAT CAGTCTCTACTTCATCTCCATTGCTTTCCTCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTATGACCAACAAGTCTCCTTGTCTGAATC ATCATCATGGTACAACTGCTTTGATGGTGATGATCAGTTCATGTTCATTAATGGAGTCTCCGCGCCGTATTTGACAACATCACTTTCTGATGATTTCTTT GAGGAAGGAGATATCAGATTATGGAACTTCTGC >RE_03D01_translated MVKTLQKTPKRMSSPSSSSSSSSSTSSSSIRMKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSLYH IINNGDNNNDMSPKSIQRVAAAAAAANTDPSSSSVSTSSPLLSSPSEDLYDVVSMSQYDQQVSLSESSSWYNCFDGDDQFMFINGVSAPYLTTSLSDDFF EEGDIRLWNFC |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 632/633 (99.8%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G44 ATGGTGAAAACACTTCAAAAGACACCAAAGAGAATGTCATCTCCATCATCATCATCTTCATCATCCTCATCAACATCATCATCATCCATAAGGATGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATGGTGAAAACACTTCAAAAGACACCAAAGAGAATGTCATCTCCATCATCATCATCTTCATCATCCTCATCAACATCATCATCATCCATAAGGATGAAGA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G44 AGTACAAGGGAGTGAGAATGAGAAGTTGGGGTTCATGGGTTTCAGAGATCAGAGCTCCTAATCAAAAGACAAGGATCTGGCTTGGTTCTTACTCAACTGC
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AGTACAAGGGAGTGAGAATGAGAAGTTGGGGCTCATGGGTTTCAGAGATCAGAGCTCCTAATCAAAAGACAAGGATCTGGCTTGGTTCTTACTCAACTGC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G44 TGAAGCCGCGGCTAGAGCCTACGACGCAGCACTCCTATGTCTTAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCAACTTCTCTCTACCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D TGAAGCCGCGGCTAGAGCCTACGACGCAGCACTCCTATGTCTTAAAGGATCCTCAGCTAATAATCTCAACTTCCCAGAGATCTCAACTTCTCTCTACCAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G44 ATTATCAACAATGGTGATAACAACAATGACATGTCCCCTAAGTCTATACAAAGAGTAGCAGCTGCAGCTGCTGCTGCCAACACAGATCCTTCCTCATCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATTATCAACAATGGTGATAACAACAATGACATGTCCCCTAAGTCTATACAAAGAGTAGCAGCTGCAGCTGCTGCTGCCAACACAGATCCTTCCTCATCAT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G44 CAGTCTCTACTTCATCTCCATTGCTTTCCTCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTATGACCAACAAGTCTCCTTGTCTGAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CAGTCTCTACTTCATCTCCATTGCTTTCCTCTCCATCTGAAGATCTCTATGATGTTGTCTCCATGTCACAGTATGACCAACAAGTCTCCTTGTCTGAATC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G44 ATCATCATGGTACAACTGCTTTGATGGTGATGATCAGTTCATGTTCATTAATGGAGTCTCCGCGCCGTATTTGACAACATCACTTTCTGATGATTTCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATCATCATGGTACAACTGCTTTGATGGTGATGATCAGTTCATGTTCATTAATGGAGTCTCCGCGCCGTATTTGACAACATCACTTTCTGATGATTTCTTT
510 520 530 540 550 560 570 580 590 600
610 620 630
AT1G44 GAGGAAGGAGATATCAGATTATGGAACTTCTGC
:::::::::::::::::::::::::::::::::
RE_03D GAGGAAGGAGATATCAGATTATGGAACTTCTGC
610 620 630
10 20 30 40 50 60 70 80 90 100
AT1G44 MVKTLQKTPKRMSSPSSSSSSSSSTSSSSIRMKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSLYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D MVKTLQKTPKRMSSPSSSSSSSSSTSSSSIRMKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSLYH
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G44 IINNGDNNNDMSPKSIQRVAAAAAAANTDPSSSSVSTSSPLLSSPSEDLYDVVSMSQYDQQVSLSESSSWYNCFDGDDQFMFINGVSAPYLTTSLSDDFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D IINNGDNNNDMSPKSIQRVAAAAAAANTDPSSSSVSTSSPLLSSPSEDLYDVVSMSQYDQQVSLSESSSWYNCFDGDDQFMFINGVSAPYLTTSLSDDFF
110 120 130 140 150 160 170 180 190 200
210
AT1G44 EEGDIRLWNFC
:::::::::::
RE_03D EEGDIRLWNFC
210
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