| Code name | RE_03D02 | |||
|---|---|---|---|---|
| Locus | AT1G77640 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03D02_732bp ATGGTGAAACAAGAACTCAAGATCCAAGTTACTACTTCCTCATCATCACTCTCTCATTCTTCATCTTCTTCTTCTTCTTCAACGTCGGCACTACGTCATC AATCTTGTAAGAACAAGATAAAGAAGTATAAAGGTGTGAGGATGCGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAATCAAAAGACAAGAAT CTGGCTAGGTTCTTACTCCACCGCAGAAGCAGCTGCTAGGGCTTACGACGCCGCTCTCTTGTGTCTTAAGGGACCTAAAGCTAATCTCAACTTCCCTAAC ATCACCACTACTTCTCCTTTTCTTATGAACATCGACGAAAAGACCCTTTTGTCCCCAAAATCAATCCAAAAGGTCGCCGCTCAAGCCGCTAACTCCTCTT CTGACCATTTTACCCCTCCGTCCGATGAAAATGATCATGATCATGATGACGGACTCGATCACCATCCATCTGCTTCTTCTTCAGCTGCATCTTCACCACC AGATGATGATCATCATAATGATGACGATGGTGATTTGGTATCGTTGATGGAATCTTTCGTGGATTACAACGAACACGTGTCTCTGATGGATCCATCGCTG TATGAATTTGGACATAATGAGATCTTCTTCACCAACGGAGATCCGTTTGATTATTCTCCACAGTTACATAGCTCAGAGGCAACGATGGATGACTTCTACG ACGATGTTGATATTCCGCTATGGAGTTTCAGT >RE_03D02_translated MVKQELKIQVTTSSSSLSHSSSSSSSSTSALRHQSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPN ITTTSPFLMNIDEKTLLSPKSIQKVAAQAANSSSDHFTPPSDENDHDHDDGLDHHPSASSSAASSPPDDDHHNDDDGDLVSLMESFVDYNEHVSLMDPSL YEFGHNEIFFTNGDPFDYSPQLHSSEATMDDFYDDVDIPLWSFS |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 730/732 (99.7%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G77 ATGGTGAAACAAGAACTCAAGATCCAAGTTACTACTTCCTCATCATCACTCTCTCATTCTTCATCTTCTTCTTCTTCTTCAACGTCGGCACTACGTCATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATGGTGAAACAAGAACTCAAGATCCAAGTTACTACTTCCTCATCATCACTCTCTCATTCTTCATCTTCTTCTTCTTCTTCAACGTCGGCACTACGTCATC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G77 AATCTTGTAAGAACAAGATAAAGAAGTATAAAGGTGTGAGGATGCGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAATCAAAAGACAAGAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AATCTTGTAAGAACAAGATAAAGAAGTATAAAGGTGTGAGGATGCGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAATCAAAAGACAAGAAT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G77 CTGGTTAGGTTCTTACTCCACCGCAGAAGCAGCTGCTAGGGCTTACGACGCTGCTCTCTTGTGTCTTAAGGGACCTAAAGCTAATCTCAACTTCCCTAAC
:::: :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CTGGCTAGGTTCTTACTCCACCGCAGAAGCAGCTGCTAGGGCTTACGACGCCGCTCTCTTGTGTCTTAAGGGACCTAAAGCTAATCTCAACTTCCCTAAC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G77 ATCACCACTACTTCTCCTTTTCTTATGAACATCGACGAAAAGACCCTTTTGTCCCCAAAATCAATCCAAAAGGTCGCCGCTCAAGCCGCTAACTCCTCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATCACCACTACTTCTCCTTTTCTTATGAACATCGACGAAAAGACCCTTTTGTCCCCAAAATCAATCCAAAAGGTCGCCGCTCAAGCCGCTAACTCCTCTT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G77 CTGACCATTTTACCCCTCCGTCCGATGAAAATGATCATGATCATGATGACGGACTCGATCACCATCCATCTGCTTCTTCTTCAGCTGCATCTTCACCACC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CTGACCATTTTACCCCTCCGTCCGATGAAAATGATCATGATCATGATGACGGACTCGATCACCATCCATCTGCTTCTTCTTCAGCTGCATCTTCACCACC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G77 AGATGATGATCATCATAATGATGACGATGGTGATTTGGTATCGTTGATGGAATCTTTCGTGGATTACAACGAACACGTGTCTCTGATGGATCCATCGCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AGATGATGATCATCATAATGATGACGATGGTGATTTGGTATCGTTGATGGAATCTTTCGTGGATTACAACGAACACGTGTCTCTGATGGATCCATCGCTG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G77 TATGAATTTGGACATAATGAGATCTTCTTCACCAACGGAGATCCGTTTGATTATTCTCCACAGTTACATAGCTCAGAGGCAACGATGGATGACTTCTACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D TATGAATTTGGACATAATGAGATCTTCTTCACCAACGGAGATCCGTTTGATTATTCTCCACAGTTACATAGCTCAGAGGCAACGATGGATGACTTCTACG
610 620 630 640 650 660 670 680 690 700
710 720 730
AT1G77 ACGATGTTGATATTCCGCTATGGAGTTTCAGT
::::::::::::::::::::::::::::::::
RE_03D ACGATGTTGATATTCCGCTATGGAGTTTCAGT
710 720 730
10 20 30 40 50 60 70 80 90 100
AT1G77 MVKQELKIQVTTSSSSLSHSSSSSSSSTSALRHQSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D MVKQELKIQVTTSSSSLSHSSSSSSSSTSALRHQSCKNKIKKYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPN
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G77 ITTTSPFLMNIDEKTLLSPKSIQKVAAQAANSSSDHFTPPSDENDHDHDDGLDHHPSASSSAASSPPDDDHHNDDDGDLVSLMESFVDYNEHVSLMDPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ITTTSPFLMNIDEKTLLSPKSIQKVAAQAANSSSDHFTPPSDENDHDHDDGLDHHPSASSSAASSPPDDDHHNDDDGDLVSLMESFVDYNEHVSLMDPSL
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT1G77 YEFGHNEIFFTNGDPFDYSPQLHSSEATMDDFYDDVDIPLWSFS
::::::::::::::::::::::::::::::::::::::::::::
RE_03D YEFGHNEIFFTNGDPFDYSPQLHSSEATMDDFYDDVDIPLWSFS
210 220 230 240
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