◆◆◆RE_03D04 detail◆◆◆

Code name	RE_03D04
Locus	AT4G02590
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment
sequence	>RE_03D04_930bp ATGGCTAGTAACAACCCTCACGACAATCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAATCCTCGGCCTTCCTAACTTCTCAGCCTCTTCTG CCGCCGGTTTATCTGGAGTTGACGGAGGATTAGGTGGTGGAGCACCGCCTATGATGCTGCAGTTGGGTTCCGGAGAAGAAGGAAGTCACATGGGTGGCTT AGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTGGGGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGA CACGGAAGTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCAT CGGCCCCACATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACATAGCATCGCTGAGCGGCTACGTAGAGAAAG AATAGCAGAACGGATCAGGGCGCTGCAGGAACTTGTACCTACTGTGAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTT CTCAGGCTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTTACTGATATGCCTCTTTCATCATCAGTTGAGG ATGAAACGGGTGAGGGTGGAAGGACTCCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTGATGGAAGAGAACGT TGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCTCCGGATACATCTTCA GTGGTCAAGCCTGAGAACAATCCTCCACAG >RE_03D04_translated MASNNPHDNLSDQTPSDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGG HGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKF LRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSS VVKPENNPPQ
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 928/930 (99.8%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G02 ATGGCTAGTAACAACCCTCACGACAACCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAATCCTCGGCCTTCCTAACTTCTCAGCCTCTTCTG :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D ATGGCTAGTAACAACCCTCACGACAATCTTTCTGACCAAACTCCTTCTGATGATTTCTTCGAGCAAATCCTCGGCCTTCCTAACTTCTCAGCCTCTTCTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G02 CCGCCGGTTTATCTGGAGTTGACGGAGGATTAGGTGGTGGAGCACCGCCTATGATGCTGCAGTTGGGTTCCGGAGAAGAAGGAAGTCACATGGGTGGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D CCGCCGGTTTATCTGGAGTTGACGGAGGATTAGGTGGTGGAGCACCGCCTATGATGCTGCAGTTGGGTTCCGGAGAAGAAGGAAGTCACATGGGTGGCTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G02 AGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTGGGGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D AGGAGGAAGTGGACCAACTGGGTTTCACAATCAGATGTTTCCTTTGGGGTTAAGTCTTGATCAAGGGAAAGGACCTGGGTTTCTTAGACCTGAAGGAGGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G02 CATGGAAGTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCAT :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D CACGGAAGTGGGAAAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCAT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G02 CGGCCCCACATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACATAGCATCGCTGAGCGGCTACGTAGAGAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D CGGCCCCACATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACATAGCATCGCTGAGCGGCTACGTAGAGAAAG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G02 AATAGCAGAACGGATCAGGGCGCTGCAGGAACTTGTACCTACTGTGAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D AATAGCAGAACGGATCAGGGCGCTGCAGGAACTTGTACCTACTGTGAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G02 CTCAGGCTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTTACTGATATGCCTCTTTCATCATCAGTTGAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D CTCAGGCTCCAAGTCAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGTGCGGTTGCTCCACTTGTTACTGATATGCCTCTTTCATCATCAGTTGAGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G02 ATGAAACGGGTGAGGGTGGAAGGACTCCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTGATGGAAGAGAACGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D ATGAAACGGGTGAGGGTGGAAGGACTCCGCAACCAGCGTGGGAGAAATGGTCTAACGATGGGACTGAACGTCAAGTGGCTAAACTGATGGAAGAGAACGT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G02 TGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCTCCGGATACATCTTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D TGGAGCCGCGATGCAGCTTCTTCAATCAAAGGCTCTTTGTATGATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAACCTCCGGATACATCTTCA 810 820 830 840 850 860 870 880 890 900 910 920 930 AT4G02 GTGGTCAAGCCTGAGAACAATCCTCCACAG :::::::::::::::::::::::::::::: RE_03D GTGGTCAAGCCTGAGAACAATCCTCCACAG 910 920 930 10 20 30 40 50 60 70 80 90 100 AT4G02 MASNNPHDNLSDQTPSDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D MASNNPHDNLSDQTPSDDFFEQILGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPEGG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G02 HGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D HGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKF 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G02 LRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03D LRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSS 210 220 230 240 250 260 270 280 290 300 310 AT4G02 VVKPENNPPQ :::::::::: RE_03D VVKPENNPPQ 310

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