| Code name | RE_03D05 | |||
|---|---|---|---|---|
| Locus | AT5G09750 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03D05_672bp ATGAATAATTATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATCAACAGCAGCAACAACAACAACAAGAATGATGATCATCATC ATCAACATAATAATGATCCAATCGGTATGGCCATGGACCAGTACACACAGCTCCATATCTTCAATCCTTTCTCTTCTTCTCATTTCCCTCCTCTCTCTTC TTCCCTCACAACCACCACTCTTCTCTCCGGAGATCAAGAAGACGACGAAGACGAAGAAGAACCTCTAGAGGAACTCGGTGCTATGAAGGAAATGATGTAC AAGATCGCAGCCATGCAATCGGTTGACATCGACCCAGCAACCGTCAAGAAACCCAAACGCCGTAACGTGAGGATCTCCGACGACCCTCAGAGTGTGGCGG CTAGACATCGCCGTGAGAGAATCAGTGAGAGGATCAGAATTCTTCAGAGACTCGTGCCAGGTGGCACTAAAATGGATACGGCTTCAATGCTCGATGAAGC TATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGGCTACTCAATAATAATACCGGATATACTCCTCCGCCACCGCAAGATCAAGCTTCTCAGGCGGTG ACGACGTCATGGGTTTCACCGCCACCACCGCCAAGTTTCGGCCGTGGGGGAAGAGGAGTAGGAGAATTAATC >RE_03D05_translated MNNYNMNPSLFQNYTWNNIINSSNNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQEDDEDEEEPLEELGAMKEMMY KIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTPPPPQDQASQAV TTSWVSPPPPPSFGRGGRGVGELI |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 671/672 (99.9%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G09 ATGAATAATTATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATCAACAGCAGCAACAACAACAACAAGAATGATGATCATCATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATGAATAATTATAATATGAACCCATCTCTCTTCCAAAATTACACTTGGAACAACATCATCAACAGCAGCAACAACAACAACAAGAATGATGATCATCATC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G09 ATCAACATAATAATGATCCAATCGGTATGGCCATGGACCAGTACACACAGCTCCATATCTTCAATCCTTTCTCTTCTTCTCATTTCCCTCCTCTCTCTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATCAACATAATAATGATCCAATCGGTATGGCCATGGACCAGTACACACAGCTCCATATCTTCAATCCTTTCTCTTCTTCTCATTTCCCTCCTCTCTCTTC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G09 TTCCCTCACAACCACCACTCTTCTCTCCGGAGATCAAGAAGACGACGAAGACGAAGAAGAACCTCTAGAGGAACTCGGTGCTATGAAGGAAATGATGTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D TTCCCTCACAACCACCACTCTTCTCTCCGGAGATCAAGAAGACGACGAAGACGAAGAAGAACCTCTAGAGGAACTCGGTGCTATGAAGGAAATGATGTAC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G09 AAGATCGCAGCCATGCAATCGGTTGACATCGACCCAGCAACCGTCAAGAAACCCAAACGCCGTAACGTGAGGATCTCCGACGACCCTCAGAGTGTGGCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AAGATCGCAGCCATGCAATCGGTTGACATCGACCCAGCAACCGTCAAGAAACCCAAACGCCGTAACGTGAGGATCTCCGACGACCCTCAGAGTGTGGCGG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G09 CTAGACATCGCCGTGAGAGAATCAGTGAGAGGATCAGAATTCTTCAGAGACTCGTGCCAGGTGGCACTAAAATGGATACGGCTTCAATGCTCGATGAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CTAGACATCGCCGTGAGAGAATCAGTGAGAGGATCAGAATTCTTCAGAGACTCGTGCCAGGTGGCACTAAAATGGATACGGCTTCAATGCTCGATGAAGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G09 TATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGGCTACTCAATAATAATACCGGATATACTCCTCCGCCGCCGCAAGATCAAGCTTCTCAGGCGGTG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
RE_03D TATACGCTATGTCAAGTTCTTGAAACGGCAGATCCGGCTACTCAATAATAATACCGGATATACTCCTCCGCCACCGCAAGATCAAGCTTCTCAGGCGGTG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670
AT5G09 ACGACGTCATGGGTTTCACCGCCACCACCGCCAAGTTTCGGCCGTGGGGGAAGAGGAGTAGGAGAATTAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ACGACGTCATGGGTTTCACCGCCACCACCGCCAAGTTTCGGCCGTGGGGGAAGAGGAGTAGGAGAATTAATC
610 620 630 640 650 660 670
10 20 30 40 50 60 70 80 90 100
AT5G09 MNNYNMNPSLFQNYTWNNIINSSNNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQEDDEDEEEPLEELGAMKEMMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D MNNYNMNPSLFQNYTWNNIINSSNNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQEDDEDEEEPLEELGAMKEMMY
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G09 KIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTPPPPQDQASQAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D KIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTPPPPQDQASQAV
110 120 130 140 150 160 170 180 190 200
210 220
AT5G09 TTSWVSPPPPPSFGRGGRGVGELI
::::::::::::::::::::::::
RE_03D TTSWVSPPPPPSFGRGGRGVGELI
210 220
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