| Code name | RE_03D08 | |||
|---|---|---|---|---|
| Locus | AT5G15830 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03D08_558bp ATGCAGCCAAATTATGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCAACTTGAACAACTACTACAACAACTTAAACCCTTCAACCAATA ACAACAACCTCAATATCCTCCAATACCCTCAAATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCCACAACTTCCGATGACGCAACTGAAGA AATCTTCGTCATCAACGAGAGGAAGCAAAGACGTATGGTATCTAACAGAGAGTCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTT CTCTCACAGGTTGCTTGGCTTCGAAGCGAGAACCACCAGCTTTTAGATAAGCTTAACCAAGTCTCCGACAACAATGATCTTGTTATTCAAGAGAACTCGA GTCTTAAAGAAGAAAACTTGGAGCTTCGTCAGGTTATCACATCCATGAAGAAGCTTGGAGGAGGCATACATGACAAATATTCTTCTCCGTCGTCTATGGA TGAATTGGATCAAGACTTTTCCTCTATCACAGATGATCCAAGAACTCATCATCCATCA >RE_03D08_translated MQPNYDSSSLNNMQQQDYFNLNNYYNNLNPSTNNNNLNILQYPQIQELNLQSPVSNNSTTSDDATEEIFVINERKQRRMVSNRESARRSRMRKQRHLDEL LSQVAWLRSENHQLLDKLNQVSDNNDLVIQENSSLKEENLELRQVITSMKKLGGGIHDKYSSPSSMDELDQDFSSITDDPRTHHPS |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 557/558 (99.8%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G15 ATGCAGCCAAATTATGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCAACTTGAACAACTACTACAACAACTTAAACCCTTCAACCAATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATGCAGCCAAATTATGATAGCTCAAGTCTTAACAACATGCAACAACAAGACTACTTCAACTTGAACAACTACTACAACAACTTAAACCCTTCAACCAATA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G15 ACAACAACCTCAATATCCTCCAATACCCTCAAATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCCACAACTTCCGATGACGCAACTGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ACAACAACCTCAATATCCTCCAATACCCTCAAATTCAAGAACTCAACCTACAATCTCCGGTAAGCAACAACTCCACAACTTCCGATGACGCAACTGAAGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G15 AATCTTCGTCATCAACGAGAGGAAGCAAAGACGTATGGTATCTAACAGAGAGTCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AATCTTCGTCATCAACGAGAGGAAGCAAAGACGTATGGTATCTAACAGAGAGTCAGCAAGAAGATCAAGAATGAGAAAGCAAAGACACTTAGATGAGCTT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G15 CTCTCACAGGTTGCTTGGCTTCGAAGCGAGAACCACCAGCTTTTAGATAAGCTTAACCAAGTCTCCGACAACAATGATCTTGTTATTCAAGAGAACTCGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CTCTCACAGGTTGCTTGGCTTCGAAGCGAGAACCACCAGCTTTTAGATAAGCTTAACCAAGTCTCCGACAACAATGATCTTGTTATTCAAGAGAACTCGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G15 GTCTTAAAGAAGAAAACTTGGAGCTTCGTCAGGTTATCACATCCATGAAGAAGCTTGGAGGAGGCATACATGACAAATATTCTTCTCCGTCGTCTATGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D GTCTTAAAGAAGAAAACTTGGAGCTTCGTCAGGTTATCACATCCATGAAGAAGCTTGGAGGAGGCATACATGACAAATATTCTTCTCCGTCGTCTATGGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550
AT5G15 TGAATTGGATCAAGACTTTTCTTCTATCACAGATGATCCAAGAACTCATCATCCATCA
::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
RE_03D TGAATTGGATCAAGACTTTTCCTCTATCACAGATGATCCAAGAACTCATCATCCATCA
510 520 530 540 550
10 20 30 40 50 60 70 80 90 100
AT5G15 MQPNYDSSSLNNMQQQDYFNLNNYYNNLNPSTNNNNLNILQYPQIQELNLQSPVSNNSTTSDDATEEIFVINERKQRRMVSNRESARRSRMRKQRHLDEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D MQPNYDSSSLNNMQQQDYFNLNNYYNNLNPSTNNNNLNILQYPQIQELNLQSPVSNNSTTSDDATEEIFVINERKQRRMVSNRESARRSRMRKQRHLDEL
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180
AT5G15 LSQVAWLRSENHQLLDKLNQVSDNNDLVIQENSSLKEENLELRQVITSMKKLGGGIHDKYSSPSSMDELDQDFSSITDDPRTHHPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D LSQVAWLRSENHQLLDKLNQVSDNNDLVIQENSSLKEENLELRQVITSMKKLGGGIHDKYSSPSSMDELDQDFSSITDDPRTHHPS
110 120 130 140 150 160 170 180
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