| Code name | RE_03D09 | |||
|---|---|---|---|---|
| Locus | AT1G24625 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03D09_627bp ATGACGGAATCTGATGATGCCTCACGAGAAACACCAGCCAGCAGAGGAGGAGAAGCCTCGTCAAATCAAGATCTGTCCAAACCAGAGTCAAACCATGTTT CACTCGATCTCAAGCTCAACGATACTTTCAACGATGACACAAAGAGCACAAAGTGTGAAGCAAACCCAAGAGTCTTCTCTTGCAACTACTGCAGACGCAA GTTCTATAGCTCTCAAGCTCTTGGAGGTCACCAGAACGCACACAAGCGAGAAAGAACAATGGCCAAACGAGCAATGCACATGGGAAGAATGTTTGGTCAC CATCACAGGCCTTACACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCATCACACCTTATCTCAGCCTCAGCCTCTTGTTTCTA GGTTTCATCATCAAGGGTATTTTGGTAACACCGTGCCGTTGTTCTTTGACTATGACGATGGTGGTAGCGACTTCTTCTGGCCCGGCAGCTTCCGTCAGGT GGTTGAGGAAGCTGAGGCTCCGGTGGTTGTGGTGGCTAGTACTGAGTCAGGCCTTGATTTGAACTCGGTTGCGGCAAATGGAGGTGTAGATAATAATAGC TCAAAGCCTGATCTTACCTTAAGACTC >RE_03D09_translated MTESDDASRETPASRGGEASSNQDLSKPESNHVSLDLKLNDTFNDDTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGH HHRPYTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFHHQGYFGNTVPLFFDYDDGGSDFFWPGSFRQVVEEAEAPVVVVASTESGLDLNSVAANGGVDNNS SKPDLTLRL |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 626/627 (99.8%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G24 ATGACGGAATCTGATGATGCCTCACGAGAAACACCAGCCAGCAGAGGAGGAGAAGCCTCGTCAAATCAAGATCTGTCCAAACCAGAATCAAACCATGTTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
RE_03D ATGACGGAATCTGATGATGCCTCACGAGAAACACCAGCCAGCAGAGGAGGAGAAGCCTCGTCAAATCAAGATCTGTCCAAACCAGAGTCAAACCATGTTT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G24 CACTCGATCTCAAGCTCAACGATACTTTCAACGATGACACAAAGAGCACAAAGTGTGAAGCAAACCCAAGAGTCTTCTCTTGCAACTACTGCAGACGCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CACTCGATCTCAAGCTCAACGATACTTTCAACGATGACACAAAGAGCACAAAGTGTGAAGCAAACCCAAGAGTCTTCTCTTGCAACTACTGCAGACGCAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G24 GTTCTATAGCTCTCAAGCTCTTGGAGGTCACCAGAACGCACACAAGCGAGAAAGAACAATGGCCAAACGAGCAATGCACATGGGAAGAATGTTTGGTCAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D GTTCTATAGCTCTCAAGCTCTTGGAGGTCACCAGAACGCACACAAGCGAGAAAGAACAATGGCCAAACGAGCAATGCACATGGGAAGAATGTTTGGTCAC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G24 CATCACAGGCCTTACACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCATCACACCTTATCTCAGCCTCAGCCTCTTGTTTCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CATCACAGGCCTTACACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCATCACACCTTATCTCAGCCTCAGCCTCTTGTTTCTA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G24 GGTTTCATCATCAAGGGTATTTTGGTAACACCGTGCCGTTGTTCTTTGACTATGACGATGGTGGTAGCGACTTCTTCTGGCCCGGCAGCTTCCGTCAGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D GGTTTCATCATCAAGGGTATTTTGGTAACACCGTGCCGTTGTTCTTTGACTATGACGATGGTGGTAGCGACTTCTTCTGGCCCGGCAGCTTCCGTCAGGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G24 GGTTGAGGAAGCTGAGGCTCCGGTGGTTGTGGTGGCTAGTACTGAGTCAGGCCTTGATTTGAACTCGGTTGCGGCAAATGGAGGTGTAGATAATAATAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D GGTTGAGGAAGCTGAGGCTCCGGTGGTTGTGGTGGCTAGTACTGAGTCAGGCCTTGATTTGAACTCGGTTGCGGCAAATGGAGGTGTAGATAATAATAGC
510 520 530 540 550 560 570 580 590 600
610 620
AT1G24 TCAAAGCCTGATCTTACCTTAAGACTC
:::::::::::::::::::::::::::
RE_03D TCAAAGCCTGATCTTACCTTAAGACTC
610 620
10 20 30 40 50 60 70 80 90 100
AT1G24 MTESDDASRETPASRGGEASSNQDLSKPESNHVSLDLKLNDTFNDDTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D MTESDDASRETPASRGGEASSNQDLSKPESNHVSLDLKLNDTFNDDTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRAMHMGRMFGH
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G24 HHRPYTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFHHQGYFGNTVPLFFDYDDGGSDFFWPGSFRQVVEEAEAPVVVVASTESGLDLNSVAANGGVDNNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D HHRPYTYTSSSLGMQAHSGLLHHTLSQPQPLVSRFHHQGYFGNTVPLFFDYDDGGSDFFWPGSFRQVVEEAEAPVVVVASTESGLDLNSVAANGGVDNNS
110 120 130 140 150 160 170 180 190 200
AT1G24 SKPDLTLRL
:::::::::
RE_03D SKPDLTLRL
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