| Code name | RE_03D12 | |||
|---|---|---|---|---|
| Locus | AT3G60580 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03D12_864bp ATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACATGAGTAATTCACATGAGGAAG AACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCGTCTGATCCGAAGTTTGCTTTTACGAGCTCTGTTCTTCTTGAAGACGGTGA AAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAACGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACG AGTCAACTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACGACGGAGGAAGATCTTGCCTTTTGTCTCATGATGC TCTCTCGAGACAAATGGAAGAAGAACAAAAGTAATAAAGAAGTAGTGGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAACAAGATTAATCGAGC AACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTA AGTAACAACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTAAGAGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCG CATCGGGACAAGCACTTGGAGGTCACAAAAGGTCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGAAACGAGTCTGTGAAACA GAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGACGAAGTCTCTGTGGTGTTTCAA >RE_03D12_translated MESYKCRVCFKSFVNGKALGGHMRSHMSNSHEEEQRPSQLSYETESDVSSSDPKFAFTSSVLLEDGESESESSRNVINLTRKRSKRTRKLDSFVTKKVKT SQLGYKPESDQEPPHSSASDTTTEEDLAFCLMMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRATTKGRYKCETCGKVFKSYQALGGHRASHKKNRV SNNKTEQRSETEYDNVVVVAKRIHECPICLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQRMIDLNLPAPTEEDEVSVVFQ |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 862/864 (99.8%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G60 ATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACATGAGTAATTCACATGAGGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D ATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAACGGAAAAGCTTTAGGTGGTCACATGAGATCTCACATGAGTAATTCACATGAGGAAG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G60 AACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCGTCTGATCCGAAGTTTGCTTTTACGAGCTCTGTTCTTCTTGAAGACGGTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AACAAAGGCCGAGTCAACTCAGTTATGAGACTGAGTCCGATGTTTCTTCGTCTGATCCGAAGTTTGCTTTTACGAGCTCTGTTCTTCTTGAAGACGGTGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G60 AAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAACGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AAGCGAGAGCGAGTCGTCGAGGAATGTTATTAACCTGACTCGGAAACGATCCAAGCGAACTCGGAAACTCGATTCGTTTGTAACCAAGAAGGTGAAAACG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G60 AGTCAACTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACGACGGAGGAAGATCTTGCCTTTTGTCTCATGATGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AGTCAACTCGGATACAAGCCTGAGTCTGATCAAGAGCCTCCTCATAGCTCAGCTTCTGATACAACGACGGAGGAAGATCTTGCCTTTTGTCTCATGATGC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G60 TCTCTCGAGATAAATGGAAGAAGAACAAAAGTAATAAAGAAGTAGTGGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAACAAGATTAATCGAGC
:::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D TCTCTCGAGACAAATGGAAGAAGAACAAAAGTAATAAAGAAGTAGTGGAAGAGATCGAGACAGAAGAAGAATCAGAAGGTTACAACAAGATTAATCGAGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G60 AACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AACAACGAAAGGAAGATACAAGTGTGAGACCTGCGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATAGAGCAAGTCATAAGAAGAACAGAGTA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G60 AGTAACAACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTAAGAGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D AGTAACAACAAAACAGAGCAACGAAGCGAAACAGAGTATGATAATGTTGTTGTTGTTGCTAAGAGAATCCATGAATGTCCGATTTGTCTAAGAGTTTTCG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT3G60 CATCGGGACAAGCACTTGGAGGTCACAAAAGATCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGAAACGAGTCTGTGAAACA
::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D CATCGGGACAAGCACTTGGAGGTCACAAAAGGTCTCACGGGGTAGGGAATTTATCTGTGAATCAACAACGTCGAGTTCATAGAAACGAGTCTGTGAAACA
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850 860
AT3G60 GAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGACGAAGTCTCTGTGGTGTTTCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D GAGGATGATAGATCTTAATCTTCCTGCACCAACCGAAGAAGACGAAGTCTCTGTGGTGTTTCAA
810 820 830 840 850 860
10 20 30 40 50 60 70 80 90 100
AT3G60 MESYKCRVCFKSFVNGKALGGHMRSHMSNSHEEEQRPSQLSYETESDVSSSDPKFAFTSSVLLEDGESESESSRNVINLTRKRSKRTRKLDSFVTKKVKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D MESYKCRVCFKSFVNGKALGGHMRSHMSNSHEEEQRPSQLSYETESDVSSSDPKFAFTSSVLLEDGESESESSRNVINLTRKRSKRTRKLDSFVTKKVKT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G60 SQLGYKPESDQEPPHSSASDTTTEEDLAFCLMMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRATTKGRYKCETCGKVFKSYQALGGHRASHKKNRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D SQLGYKPESDQEPPHSSASDTTTEEDLAFCLMMLSRDKWKKNKSNKEVVEEIETEEESEGYNKINRATTKGRYKCETCGKVFKSYQALGGHRASHKKNRV
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT3G60 SNNKTEQRSETEYDNVVVVAKRIHECPICLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQRMIDLNLPAPTEEDEVSVVFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03D SNNKTEQRSETEYDNVVVVAKRIHECPICLRVFASGQALGGHKRSHGVGNLSVNQQRRVHRNESVKQRMIDLNLPAPTEEDEVSVVFQ
210 220 230 240 250 260 270 280
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