◆◆◆RE_03E04 detail◆◆◆

Code name	RE_03E04
Locus	AT3G54810
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	AT3G54810.2(=.1)_by_RIKE読まれた配列に有N
sequence	>RE_03E04_966bp ATGATTGGAACAAGCTTCCCCGAGGATCTTGATTGTGGCAACTTCTTTGACAACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGACGTCGGTT TCGGCATAGGTGACTCCGACTCTTTCCCTACCATCTGGACCACTCATCACGACACGTGGCCTGCCGCTTCTGATCCTCTCTTCTCTTCCAACACCAACTC TGATTCATCACCTGAGCTCTATGTTCCGTTTGAGGACATTGTTAAGGTGGAAAGACCTCCAAGCTTTGTAGAGGAAACATTGGTTGAGAAGAAGGAAGAT TCGTTTTCGACAAACACTGATTCATCATCTTCTCATAGCCAATTCAGGAGCTCAAGTCCAGTGTCGGTTCTCGAGAGCAGCTCCTCCTCGTCTCAAACCA CCAACACAACCTCCCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCTGTCCAGGATAAAGATAGAGTCAAAGACAATGT GTGCGGTGGTGACTCGCGCCTCATCATTAGAATACCGAAACAGTTTCTCTCTGATCACAACAAGATGATCAACAAGAAGAAGAAGAAGAAGGCCAAGATT ACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAACGTCGATTCGTATTCTTCAGAGCAATATCCGCTTAGGAAATGTATGCACT GTGAGGTCACCAAGACTCCACAGTGGAGGCTTGGTCCAATGGGTCCAAAGACACTTTGCAATGCGTGCGGTGTACGTTACAAATCAGGGAGGCTTTTCCC GGAGTACCGTCCAGCTGCTAGTCCAACATTTACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAACAAGAGATGCAGTGATGGT AGCTACATAACCGAAGAGAATGATCTGCAAGGGCTGATTCCGAACAATGCCTACATTGGCGTAGAC >RE_03E04_translated MIGTSFPEDLDCGNFFDNMDDLMDFPGGDIDVGFGIGDSDSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEETLVEKKED SFSTNTDSSSSHSQFRSSSPVSVLESSSSSSQTTNTTSLVLPGKHGRPRTKRPRPPVQDKDRVKDNVCGGDSRLIIRIPKQFLSDHNKMINKKKKKKAKI TSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKRCSDG SYITEENDLQGLIPNNAYIGVD
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 965/966 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G54 ATGATTGGAACAAGCTTCCCCGAGGATCTTGATTGTGGCAACTTCTTTGACAACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGATGTCGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: RE_03E ATGATTGGAACAAGCTTCCCCGAGGATCTTGATTGTGGCAACTTCTTTGACAACATGGATGATCTCATGGACTTTCCCGGTGGAGATATCGACGTCGGTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G54 TCGGCATAGGTGACTCCGACTCTTTCCCTACCATCTGGACCACTCATCACGACACGTGGCCTGCCGCTTCTGATCCTCTCTTCTCTTCCAACACCAACTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E TCGGCATAGGTGACTCCGACTCTTTCCCTACCATCTGGACCACTCATCACGACACGTGGCCTGCCGCTTCTGATCCTCTCTTCTCTTCCAACACCAACTC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G54 TGATTCATCACCTGAGCTCTATGTTCCGTTTGAGGACATTGTTAAGGTGGAAAGACCTCCAAGCTTTGTAGAGGAAACATTGGTTGAGAAGAAGGAAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E TGATTCATCACCTGAGCTCTATGTTCCGTTTGAGGACATTGTTAAGGTGGAAAGACCTCCAAGCTTTGTAGAGGAAACATTGGTTGAGAAGAAGGAAGAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G54 TCGTTTTCGACAAACACTGATTCATCATCTTCTCATAGCCAATTCAGGAGCTCAAGTCCAGTGTCGGTTCTCGAGAGCAGCTCCTCCTCGTCTCAAACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E TCGTTTTCGACAAACACTGATTCATCATCTTCTCATAGCCAATTCAGGAGCTCAAGTCCAGTGTCGGTTCTCGAGAGCAGCTCCTCCTCGTCTCAAACCA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G54 CCAACACAACCTCCCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCTGTCCAGGATAAAGATAGAGTCAAAGACAATGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E CCAACACAACCTCCCTTGTTCTCCCTGGAAAGCACGGTCGTCCACGCACAAAACGCCCTCGTCCACCTGTCCAGGATAAAGATAGAGTCAAAGACAATGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G54 GTGCGGTGGTGACTCGCGCCTCATCATTAGAATACCGAAACAGTTTCTCTCTGATCACAACAAGATGATCAACAAGAAGAAGAAGAAGAAGGCCAAGATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E GTGCGGTGGTGACTCGCGCCTCATCATTAGAATACCGAAACAGTTTCTCTCTGATCACAACAAGATGATCAACAAGAAGAAGAAGAAGAAGGCCAAGATT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G54 ACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAACGTCGATTCGTATTCTTCAGAGCAATATCCGCTTAGGAAATGTATGCACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E ACTTCTTCCTCTTCTTCGTCCGGGATTGATCTTGAAGTCAATGGAAACAACGTCGATTCGTATTCTTCAGAGCAATATCCGCTTAGGAAATGTATGCACT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G54 GTGAGGTCACCAAGACTCCACAGTGGAGGCTTGGTCCAATGGGTCCAAAGACACTTTGCAATGCGTGCGGTGTACGTTACAAATCAGGGAGGCTTTTCCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E GTGAGGTCACCAAGACTCCACAGTGGAGGCTTGGTCCAATGGGTCCAAAGACACTTTGCAATGCGTGCGGTGTACGTTACAAATCAGGGAGGCTTTTCCC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G54 GGAGTACCGTCCAGCTGCTAGTCCAACATTTACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAACAAGAGATGCAGTGATGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E GGAGTACCGTCCAGCTGCTAGTCCAACATTTACTCCAGCTCTTCACTCAAACTCACACAAGAAAGTGGCTGAAATGAGAAACAAGAGATGCAGTGATGGT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 AT3G54 AGCTACATAACCGAAGAGAATGATCTGCAAGGGCTGATTCCGAACAATGCCTACATTGGCGTAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E AGCTACATAACCGAAGAGAATGATCTGCAAGGGCTGATTCCGAACAATGCCTACATTGGCGTAGAC 910 920 930 940 950 960 10 20 30 40 50 60 70 80 90 100 AT3G54 MIGTSFPEDLDCGNFFDNMDDLMDFPGGDIDVGFGIGDSDSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEETLVEKKED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E MIGTSFPEDLDCGNFFDNMDDLMDFPGGDIDVGFGIGDSDSFPTIWTTHHDTWPAASDPLFSSNTNSDSSPELYVPFEDIVKVERPPSFVEETLVEKKED 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G54 SFSTNTDSSSSHSQFRSSSPVSVLESSSSSSQTTNTTSLVLPGKHGRPRTKRPRPPVQDKDRVKDNVCGGDSRLIIRIPKQFLSDHNKMINKKKKKKAKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E SFSTNTDSSSSHSQFRSSSPVSVLESSSSSSQTTNTTSLVLPGKHGRPRTKRPRPPVQDKDRVKDNVCGGDSRLIIRIPKQFLSDHNKMINKKKKKKAKI 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G54 TSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKRCSDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E TSSSSSSGIDLEVNGNNVDSYSSEQYPLRKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKKVAEMRNKRCSDG 210 220 230 240 250 260 270 280 290 300 310 320 AT3G54 SYITEENDLQGLIPNNAYIGVD :::::::::::::::::::::: RE_03E SYITEENDLQGLIPNNAYIGVD 310 320

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