| Code name | RE_03E07 | |||
|---|---|---|---|---|
| Locus | AT1G07980 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03E07_618bp ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGTCGTCGTCAATAAAGCGAGTGGTCGGAGTAAACGCAGCTCCGGTTCCAGAACGA AGAAGACGTCGAACAAGGTTAACATTGTGAAGAAGAAGCCGGAGATTTACGAGATCTCAGAATCATCGAGCAGTGACTCTGTGGAAGAAGCAATAAGAGG CGATGAGGCGAAGAAAAGTAACGGCGTCGTGAGCAAGAGGGGTAACGGAAAGAGTGTAGGAATTCCGACGAAGACGAGTAAAAATCGAGAGGAGGACGAT GGAGGCGCGGAAGATGCTAAGATCAAGTTTCCGATGAATCGGATTCGGCGGATCATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTAT TTCTTGTCAACAAAGCCACGGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACA CCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAGA GGCATGACAGATGCAGGC >RE_03E07_translated MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDSVEEAIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDD GGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWER GMTDAG |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 617/618 (99.8%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G07 ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGTCGTCGTCAATAAAGCGAGTGGTCGGAGTAAACGCAGCTCCGGTTCCAGAACGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E ATGGTGTCGTCAAAGAAACCCAAGGAGAAGAAGGCGAGGAGCGATGTCGTCGTCAATAAAGCGAGTGGTCGGAGTAAACGCAGCTCCGGTTCCAGAACGA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G07 AGAAGACGTCGAACAAGGTTAACATTGTGAAGAAGAAGCCGGAGATTTACGAGATCTCAGAATCATCGAGCAGTGACTCTGTGGAAGAAGCAATAAGAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E AGAAGACGTCGAACAAGGTTAACATTGTGAAGAAGAAGCCGGAGATTTACGAGATCTCAGAATCATCGAGCAGTGACTCTGTGGAAGAAGCAATAAGAGG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G07 CGATGAGGCGAAGAAAAGTAACGGCGTCGTGAGCAAGAGGGGTAACGGAAAGAGTGTAGGAATTCCGACGAAGACGAGTAAAAATCGAGAAGAGGACGAT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
RE_03E CGATGAGGCGAAGAAAAGTAACGGCGTCGTGAGCAAGAGGGGTAACGGAAAGAGTGTAGGAATTCCGACGAAGACGAGTAAAAATCGAGAGGAGGACGAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G07 GGAGGCGCGGAAGATGCTAAGATCAAGTTTCCGATGAATCGGATTCGGCGGATCATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E GGAGGCGCGGAAGATGCTAAGATCAAGTTTCCGATGAATCGGATTCGGCGGATCATGAGAAGCGATAATTCTGCTCCTCAGATTATGCAGGATGCTGTAT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G07 TTCTTGTCAACAAAGCCACGGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E TTCTTGTCAACAAAGCCACGGAGATGTTCATTGAGCGGTTTTCTGAAGAAGCTTATGATAGTTCCGTCAAGGACAAAAAGAAATTCATCCACTACAAACA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G07 CCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E CCTCTCATCCGTAGTGAGTAACGACCAGAGATACGAGTTCCTTGCAGATAGTGTTCCCGAGAAACTTAAAGCAGAGGCCGCGTTGGAGGAATGGGAAAGA
510 520 530 540 550 560 570 580 590 600
610
AT1G07 GGCATGACAGATGCAGGC
::::::::::::::::::
RE_03E GGCATGACAGATGCAGGC
610
10 20 30 40 50 60 70 80 90 100
AT1G07 MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDSVEEAIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRTKKTSNKVNIVKKKPEIYEISESSSSDSVEEAIRGDEAKKSNGVVSKRGNGKSVGIPTKTSKNREEDD
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G07 GGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E GGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYDSSVKDKKKFIHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWER
110 120 130 140 150 160 170 180 190 200
AT1G07 GMTDAG
::::::
RE_03E GMTDAG
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