◆◆◆RE_03E09 detail◆◆◆

Code name	RE_03E09
Locus	AT3G46640
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	AT3G46640.2(=.1)_by_RIKE読まれた配列に有N
sequence	>RE_03E09_969bp ATGGGAGAGGAAGTACAAATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGATTACCAAGCGACGAAGATCTAGCAT CTCTTTCTTACTCTCTGATTCCACCGAATTTGGCGATGGCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAGAC GACGCTCTCGTCGCTACGTGGTGGATCTTCAGGTCCAAATACCTCGTCGTCGAATAATAACGTGGAGGAGGAAGATCGAGTTGGATCTAGCAGTCCTGGA TCGGATTCGAAGAAGCAAAAGACATCAAACGGTGATGGAGATGACGGTGGCGGTGTGGATCCGGATTCGGCGATGGCGGCGGAAGAAGGAGATTCAGGAA CTGAAGATCTATCTGGGAAAACACTTAAACGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCACTTAGGGATCAA AAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGATTAACTCGTGAGAACGTTGCGTCTCATCTTCAAAAGTATAGGCTTTACCTCAAA AGGATGCAGGGATTGACTAATGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCCTCCACAGAGCTTCCAAGATATCGGTGGCGGTG GCGGTAGCAGCGGTAATGTTGGAGTGCCGATTCCGGGGGCGTATGGAACGCAACAGATGATGCAGATGCCAGTTTATGCACATCATATGGGTATGCAAGG ATATCATCATCAAAATCATAATCATGATCCTTATCATCAGAATCATCGTCATCATCATGGAGCTGGTGGAAATGGTGCGTTTGAGTCAAATCCTTATATG ATGCAGCAGAATAAGTTTGGATCCATGGCTTCTTATCCGTCTGTTGGAGGTGGAAGCGCAAATGAGAAT >RE_03E09_translated MGEEVQMSDYDVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRGGSSGPNTSSSNNNVEEEDRVGSSSPG SDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK RMQGLTNEGPSASDKLFSSTPVPPQSFQDIGGGGGSSGNVGVPIPGAYGTQQMMQMPVYAHHMGMQGYHHQNHNHDPYHQNHRHHHGAGGNGAFESNPYM MQQNKFGSMASYPSVGGGSANEN
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 968/969 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G46 ATGGGAGAGGAAGTACAAATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGATTACCAAGCGACGAAGATCTAGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E ATGGGAGAGGAAGTACAAATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGATTACCAAGCGACGAAGATCTAGCAT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G46 CTCTTTCTTACTCTCTGATTCCACCGAATTTGGCGATGGCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E CTCTTTCTTACTCTCTGATTCCACCGAATTTGGCGATGGCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAGAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G46 GACGCTCTCGTCGCTACGTGGTGGATCTTCAGGTCCAAATACCTCGTCGTCGAATAATAACGTGGAGGAGGAAGATCGAGTTGGATCTAGCAGTCCTGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E GACGCTCTCGTCGCTACGTGGTGGATCTTCAGGTCCAAATACCTCGTCGTCGAATAATAACGTGGAGGAGGAAGATCGAGTTGGATCTAGCAGTCCTGGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G46 TCGGATTCGAAGAAGCAAAAGACATCAAACGGTGATGGAGATGACGGTGGCGGTGTGGATCCGGATTCGGCGATGGCGGCGGAAGAAGGAGATTCAGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E TCGGATTCGAAGAAGCAAAAGACATCAAACGGTGATGGAGATGACGGTGGCGGTGTGGATCCGGATTCGGCGATGGCGGCGGAAGAAGGAGATTCAGGAA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G46 CTGAAGATCTATCTGGGAAAACACTTAAACGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCACTTAGGGATCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E CTGAAGATCTATCTGGGAAAACACTTAAACGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCACTTAGGGATCAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G46 AAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGATTAACTCGTGAGAACGTTGCGTCTCATCTTCAAAAGTATAGGCTTTACCTCAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E AAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGATTAACTCGTGAGAACGTTGCGTCTCATCTTCAAAAGTATAGGCTTTACCTCAAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G46 AGGATGCAGGGATTGACTAATGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCCTCCACAGAGCTTCCAAGATATCGGTGGCGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E AGGATGCAGGGATTGACTAATGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCCTCCACAGAGCTTCCAAGATATCGGTGGCGGTG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G46 GCGGTAGCAGCGGTAATGTTGGAGTGCCGATTCCGGGGGCGTATGGAACGCAACAGATGATGCAGATGCCAGTTTATGCACATCATATGGGTATGCAAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E GCGGTAGCAGCGGTAATGTTGGAGTGCCGATTCCGGGGGCGTATGGAACGCAACAGATGATGCAGATGCCAGTTTATGCACATCATATGGGTATGCAAGG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G46 ATATCATCATCAAAATCATAATCATGATCCTTATCATCAGAATCATCGTCATCATCATGGAGCTGGTGGAAATGGTGCGTTTGAGTCAAATCCTTATATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E ATATCATCATCAAAATCATAATCATGATCCTTATCATCAGAATCATCGTCATCATCATGGAGCTGGTGGAAATGGTGCGTTTGAGTCAAATCCTTATATG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 AT3G46 ATGCAGCAGAATAAGTTTGGATCCATGGCTTCTTATCCTTCTGTTGGAGGTGGAAGCGCAAATGAGAAT :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: RE_03E ATGCAGCAGAATAAGTTTGGATCCATGGCTTCTTATCCGTCTGTTGGAGGTGGAAGCGCAAATGAGAAT 910 920 930 940 950 960 10 20 30 40 50 60 70 80 90 100 AT3G46 MGEEVQMSDYDVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRGGSSGPNTSSSNNNVEEEDRVGSSSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E MGEEVQMSDYDVSGDGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRGGSSGPNTSSSNNNVEEEDRVGSSSPG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G46 SDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E SDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGTEDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G46 RMQGLTNEGPSASDKLFSSTPVPPQSFQDIGGGGGSSGNVGVPIPGAYGTQQMMQMPVYAHHMGMQGYHHQNHNHDPYHQNHRHHHGAGGNGAFESNPYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03E RMQGLTNEGPSASDKLFSSTPVPPQSFQDIGGGGGSSGNVGVPIPGAYGTQQMMQMPVYAHHMGMQGYHHQNHNHDPYHQNHRHHHGAGGNGAFESNPYM 210 220 230 240 250 260 270 280 290 300 310 320 AT3G46 MQQNKFGSMASYPSVGGGSANEN ::::::::::::::::::::::: RE_03E MQQNKFGSMASYPSVGGGSANEN 310 320

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