| Code name | RE_03E10 | |||
|---|---|---|---|---|
| Locus | AT5G49700 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03E10_828bp ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTTTCCAAGCTTCCTCATCATCAACAACAACAGCAACAACAACAACAACAACACTCCCTTA CCTCTCACTTCCACCTCTCCTCCACCGTAACCCCCACCGTCGATGACTCCTCCATCGAAGTGGTCCGACGTCCACGTGGCAGACCACCAGGTTCCAAAAA CAAACCTAAACCACCCGTCTTCGTCACACGTGACACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTCGTCGAAGCCATC AACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGCTCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTG GCTCTACCATAACTTTCCATGGAAAGTTTGATCTCCTCTCCGTCTCCGCAACGTTTCTCCCTCCTCCGCCTCGTACTTCCTTGTCTCCTCCCGTTTCTAA CTTCTTCACCGTCTCTCTCGCTGGACCTCAAGGACAAATCATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTTTACGTCATCGCCGCA AGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGCGGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTG GTGGCGGTGAAGAGTCAGGACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGGTGGCTCTGATGTTATTTGGGC CCCTACAGCCAGAGCTCCACCGCCATAC >RE_03E10_translated MKGEYREQKSNEMFSKLPHHQQQQQQQQQQHSLTSHFHLSSTVTPTVDDSSIEVVRRPRGRPPGSKNKPKPPVFVTRDTDPPMSPYILEVPSGNDVVEAI NRFCRRKSIGVCVLSGSGSVANVTLRQPSPAALGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGPQGQIIGGFVAGPLISAGTVYVIAA SFNNPSYHRLPAEEEQKHSAGTGEREGQSPPVSGGGEESGQMAGSGGESCGVSMYSCHMGGSDVIWAPTARAPPPY |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 827/828 (99.9%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G49 ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTTTCCAAGCTTCCTCATCATCAACAACAACAGCAACAACAACAACAACAACACTCTCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
RE_03E ATGAAAGGTGAATACAGAGAGCAAAAGAGTAACGAAATGTTTTCCAAGCTTCCTCATCATCAACAACAACAGCAACAACAACAACAACAACACTCCCTTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G49 CCTCTCACTTCCACCTCTCCTCCACCGTAACCCCCACCGTCGATGACTCCTCCATCGAAGTGGTCCGACGTCCACGTGGCAGACCACCAGGTTCCAAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E CCTCTCACTTCCACCTCTCCTCCACCGTAACCCCCACCGTCGATGACTCCTCCATCGAAGTGGTCCGACGTCCACGTGGCAGACCACCAGGTTCCAAAAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G49 CAAACCTAAACCACCCGTCTTCGTCACACGTGACACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTCGTCGAAGCCATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E CAAACCTAAACCACCCGTCTTCGTCACACGTGACACCGACCCTCCTATGAGTCCTTACATCCTCGAAGTTCCTTCAGGAAACGACGTCGTCGAAGCCATC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G49 AACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGCTCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E AACCGTTTCTGCCGCCGTAAATCCATCGGAGTCTGCGTCCTTAGTGGCTCTGGCTCTGTAGCTAACGTCACTTTACGTCAGCCATCACCGGCAGCTCTTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G49 GCTCTACCATAACTTTCCATGGAAAGTTTGATCTCCTCTCCGTCTCCGCAACGTTTCTCCCTCCTCCGCCTCGTACTTCCTTGTCTCCTCCCGTTTCTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E GCTCTACCATAACTTTCCATGGAAAGTTTGATCTCCTCTCCGTCTCCGCAACGTTTCTCCCTCCTCCGCCTCGTACTTCCTTGTCTCCTCCCGTTTCTAA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G49 CTTCTTCACCGTCTCTCTCGCTGGACCTCAAGGACAAATCATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTTTACGTCATCGCCGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E CTTCTTCACCGTCTCTCTCGCTGGACCTCAAGGACAAATCATCGGAGGGTTCGTCGCTGGTCCACTTATTTCGGCAGGAACAGTTTACGTCATCGCCGCA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G49 AGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGCGGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E AGTTTCAACAACCCTTCTTATCACCGGTTACCGGCGGAAGAAGAGCAAAAACACTCGGCGGGGACAGGGGAAAGAGAGGGACAATCTCCGCCGGTCTCTG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G49 GTGGCGGTGAAGAGTCAGGACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGGTGGCTCTGATGTTATTTGGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E GTGGCGGTGAAGAGTCAGGACAGATGGCGGGAAGTGGAGGAGAGTCGTGTGGGGTATCAATGTACAGTTGCCACATGGGTGGCTCTGATGTTATTTGGGC
710 720 730 740 750 760 770 780 790 800
810 820
AT5G49 CCCTACAGCCAGAGCTCCACCGCCATAC
::::::::::::::::::::::::::::
RE_03E CCCTACAGCCAGAGCTCCACCGCCATAC
810 820
10 20 30 40 50 60 70 80 90 100
AT5G49 MKGEYREQKSNEMFSKLPHHQQQQQQQQQQHSLTSHFHLSSTVTPTVDDSSIEVVRRPRGRPPGSKNKPKPPVFVTRDTDPPMSPYILEVPSGNDVVEAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E MKGEYREQKSNEMFSKLPHHQQQQQQQQQQHSLTSHFHLSSTVTPTVDDSSIEVVRRPRGRPPGSKNKPKPPVFVTRDTDPPMSPYILEVPSGNDVVEAI
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G49 NRFCRRKSIGVCVLSGSGSVANVTLRQPSPAALGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGPQGQIIGGFVAGPLISAGTVYVIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E NRFCRRKSIGVCVLSGSGSVANVTLRQPSPAALGSTITFHGKFDLLSVSATFLPPPPRTSLSPPVSNFFTVSLAGPQGQIIGGFVAGPLISAGTVYVIAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT5G49 SFNNPSYHRLPAEEEQKHSAGTGEREGQSPPVSGGGEESGQMAGSGGESCGVSMYSCHMGGSDVIWAPTARAPPPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E SFNNPSYHRLPAEEEQKHSAGTGEREGQSPPVSGGGEESGQMAGSGGESCGVSMYSCHMGGSDVIWAPTARAPPPY
210 220 230 240 250 260 270
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