| Code name | RE_03E11 | |||
|---|---|---|---|---|
| Locus | AT3G49940 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03E11_741bp ATGAGTTGCAACGGTTGTCGAGTTCTACGAAAAGGTTGCAGTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC ACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGTTTAATGTCTTTCATCTCCGCCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTT GCTATACGAAGCTTGTGGGAGAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACGGGGAATTGGAATGTTTGTCAAGCGGCGGTTGAGACG GTGCTTCGTGGTGGTTCTTTAAAACCAATACCGGAGCTTCTTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGACGAAGCTTCGGAGATCT GTACGGAAATGTTGAATCTACGAAAAGCTGATGATTCCGGTGATCGGAACATTTATCATCACTGCCGATTCTCGAGCTCTAGATCTAGATCAAGATCAAC AGCTTCTCCGCCGAAACGGAAACGATTATCGTCGGAACAACAACCTTCGTCGGAGCTTGATCTCTCTCTTATTCCTATTTATCCGATTAAAACCTTGCCG TTTAAGGAAGATACACCGTCGATGTACTCGGAGGAGTCTGTTACCACGGTTTCGTTTCAAAACAACAACGCCGGTGATCGGTACGTACGCTGCGGCGGAG GAGGAGGAGGAGCAACGACAAAGTTGCTCAATCTCTTCGCT >RE_03E11_translated MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVET VLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLP FKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATTKLLNLFA |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 739/741 (99.7%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G49 ATGAGTTGCAATGGTTGTCGAGTTCTACGAAAAGGTTGCAGTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E ATGAGTTGCAACGGTTGTCGAGTTCTACGAAAAGGTTGCAGTGAGAATTGCATCCTCCGTCCATGTATTCAATGGATCGAATCACCTGAAGCTCAAGGCC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G49 ACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGTTTAATGTCTTTCATCTCCGCCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E ACGCCACCGTCTTCGTCGCTAAGTTCTTCGGCCGTGCCGGTTTAATGTCTTTCATCTCCGCCGTACCGGAATCTCAATGCCCTGCTTTGTTTCAGTCTTT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G49 GCTATACGAAGCTTGTGGGAGAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACGGGGAATTGGAATGTTTGTCAAGCGGCGGTTGAGACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E GCTATACGAAGCTTGTGGGAGAACTGTGAATCCGGTGAACGGAGCCGTCGGATTGTTGTGGACGGGGAATTGGAATGTTTGTCAAGCGGCGGTTGAGACG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G49 GTGCTTCGTGGTGGTTCTTTAAAACCAATACCGGAGCTTCTTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGACGAAGCTTCGGAGATCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E GTGCTTCGTGGTGGTTCTTTAAAACCAATACCGGAGCTTCTTAACGGCGGTGGATTCGCCGGGTTTCCGTCTCCTACTTCCGACGAAGCTTCGGAGATCT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G49 GTACGGAAATGTTGAATCTACGAAAAGCTGATGATTCCGGTGATCGGAACATTTATCATCACTGCCGATTCTCAAGCTCTAGATCTAGATCAAGATCAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
RE_03E GTACGGAAATGTTGAATCTACGAAAAGCTGATGATTCCGGTGATCGGAACATTTATCATCACTGCCGATTCTCGAGCTCTAGATCTAGATCAAGATCAAC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G49 AGCTTCTCCGCCGAAACGGAAACGATTATCGTCGGAACAACAACCTTCGTCGGAGCTTGATCTCTCTCTTATTCCTATTTATCCGATTAAAACCTTGCCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E AGCTTCTCCGCCGAAACGGAAACGATTATCGTCGGAACAACAACCTTCGTCGGAGCTTGATCTCTCTCTTATTCCTATTTATCCGATTAAAACCTTGCCG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G49 TTTAAGGAAGATACACCGTCGATGTACTCGGAGGAGTCTGTTACCACGGTTTCGTTTCAAAACAACAACGCCGGTGATCGGTACGTACGCTGCGGCGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E TTTAAGGAAGATACACCGTCGATGTACTCGGAGGAGTCTGTTACCACGGTTTCGTTTCAAAACAACAACGCCGGTGATCGGTACGTACGCTGCGGCGGAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740
AT3G49 GAGGAGGAGGAGCAACGACAAAGTTGCTCAATCTCTTCGCT
:::::::::::::::::::::::::::::::::::::::::
RE_03E GAGGAGGAGGAGCAACGACAAAGTTGCTCAATCTCTTCGCT
710 720 730 740
10 20 30 40 50 60 70 80 90 100
AT3G49 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVET
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G49 VLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E VLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQQPSSELDLSLIPIYPIKTLP
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT3G49 FKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATTKLLNLFA
:::::::::::::::::::::::::::::::::::::::::::::::
RE_03E FKEDTPSMYSEESVTTVSFQNNNAGDRYVRCGGGGGGATTKLLNLFA
210 220 230 240
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