| Code name | RE_03E12 | |||
|---|---|---|---|---|
| Locus | AT5G40710 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03E12_816bp ATGGGAAGATCGAATTCTCAATGCCCATCTCATTGGATTCTCCTCTGCTTCTTCATCTCTTCTCAGTTTTGGGGATTCTCACTTCCCACTTCGATAATTC AACAAAATCTCGAGGGTTTTAAAGATCCTGAAGACGGTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATTCAAGAGTA TCTCATGCCGTATGTGGAAAAGGAGCGGTATCAGTTACCGAGTACTTGTAGAGTTCATCGAGACAACGATATTTATAGAGAACAAGAAGAGCACAAATTG CGTTCAGATATTAATGAGTGGCGTTGTGGATTCTGCAAAAAGGCTTTTTATGAGGAGAAGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTAC TTAATGCGAGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCGTTGCATTGTGATCTTGTTGTAGACACAGCTCGGCTTAAGTCCAAGTGTAATCCTGC AGCTGCTGCAAAAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTTCATCAGCCAACCGTCTTCACGATTTCTTCTTG CGTCAGTTCTGCGATGCACATACATGTTCAGGAGGATCAAAGCCCTTATCTCAAAAACCAAAGAAGAGGAGTATAGTGTACATTATTTTCTCCATCATCG TTTTGGTAGTGCTTCTTCTCTATTACAGCTTTGTCTATTTGTTCCGAAGAGGATTAAAGAGAAGATCTCAAGATTTGAAGCGTATTAGACACAATGGTCT GAAGAAGAAACCCTTC >RE_03E12_translated MGRSNSQCPSHWILLCFFISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVAWKIIQEYLMPYVEKERYQLPSTCRVHRDNDIYREQEEHKL RSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNKGSSANRLHDFFL RQFCDAHTCSGGSKPLSQKPKKRSIVYIIFSIIVLVVLLLYYSFVYLFRRGLKRRSQDLKRIRHNGLKKKPF |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 813/816 (99.6%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G40 ATGGGAAGATCGAATTCTCAATGCCCATCTCATTGGATTCTCCTCTGCTTCTTCATCTCTTCTCAGTTTTGGGGATTCTCACTTCCCACTTCGATAATTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E ATGGGAAGATCGAATTCTCAATGCCCATCTCATTGGATTCTCCTCTGCTTCTTCATCTCTTCTCAGTTTTGGGGATTCTCACTTCCCACTTCGATAATTC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G40 AACAAAATCTCGAGGGTTTTAAAGATCCTGAAGACGGTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATTCAAGAGTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E AACAAAATCTCGAGGGTTTTAAAGATCCTGAAGACGGTTTTCATGAGATTCATTGTTCAAGAGAACGTAGCAGAGTTGCTTGGAAAATCATTCAAGAGTA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G40 TCTCATGCCGTATGTGGAAAAGGAGCGGTATCAGTTACCGAGTACTTGTAGAGTTCATCGAGACAATGACATTTATAGAGAACAAGAAGAGCACAAATTG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::::::::::::::::::::::::::
RE_03E TCTCATGCCGTATGTGGAAAAGGAGCGGTATCAGTTACCGAGTACTTGTAGAGTTCATCGAGACAACGATATTTATAGAGAACAAGAAGAGCACAAATTG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G40 CGTTCAGATATTAATGAGTGGCGTTGTGGATTCTGCAAAAAGGCTTTTTATGAAGAGAAGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
RE_03E CGTTCAGATATTAATGAGTGGCGTTGTGGATTCTGCAAAAAGGCTTTTTATGAGGAGAAGTATCTCGATAAGCATTTCGATTCGCGCCATTACAATTTAC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G40 TTAATGCGAGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCGTTGCATTGTGATCTTGTTGTAGACACAGCTCGGCTTAAGTCCAAGTGTAATCCTGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E TTAATGCGAGTCATGGTAAATGTCTGTCGGATCTTTGTGGAGCGTTGCATTGTGATCTTGTTGTAGACACAGCTCGGCTTAAGTCCAAGTGTAATCCTGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G40 AGCTGCTGCAAAAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTTCATCAGCCAACCGTCTTCACGATTTCTTCTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E AGCTGCTGCAAAAAACCGGCACTTATGTGAGAGTTTGGCTAATAGTTGTTTTCCGGTAAATAAAGGTTCATCAGCCAACCGTCTTCACGATTTCTTCTTG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G40 CGTCAGTTCTGCGATGCACATACATGTTCAGGAGGATCAAAGCCCTTATCTCAAAAACCAAAGAAGAGGAGTATAGTGTACATTATTTTCTCCATCATCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E CGTCAGTTCTGCGATGCACATACATGTTCAGGAGGATCAAAGCCCTTATCTCAAAAACCAAAGAAGAGGAGTATAGTGTACATTATTTTCTCCATCATCG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G40 TTTTGGTAGTGCTTCTTCTCTATTACAGCTTTGTCTATTTGTTCCGAAGAGGATTAAAGAGAAGATCTCAAGATTTGAAGCGTATTAGACACAATGGTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E TTTTGGTAGTGCTTCTTCTCTATTACAGCTTTGTCTATTTGTTCCGAAGAGGATTAAAGAGAAGATCTCAAGATTTGAAGCGTATTAGACACAATGGTCT
710 720 730 740 750 760 770 780 790 800
810
AT5G40 GAAGAAGAAACCCTTC
::::::::::::::::
RE_03E GAAGAAGAAACCCTTC
810
10 20 30 40 50 60 70 80 90 100
AT5G40 MGRSNSQCPSHWILLCFFISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVAWKIIQEYLMPYVEKERYQLPSTCRVHRDNDIYREQEEHKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E MGRSNSQCPSHWILLCFFISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVAWKIIQEYLMPYVEKERYQLPSTCRVHRDNDIYREQEEHKL
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G40 RSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNKGSSANRLHDFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E RSDINEWRCGFCKKAFYEEKYLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLANSCFPVNKGSSANRLHDFFL
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT5G40 RQFCDAHTCSGGSKPLSQKPKKRSIVYIIFSIIVLVVLLLYYSFVYLFRRGLKRRSQDLKRIRHNGLKKKPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03E RQFCDAHTCSGGSKPLSQKPKKRSIVYIIFSIIVLVVLLLYYSFVYLFRRGLKRRSQDLKRIRHNGLKKKPF
210 220 230 240 250 260 270
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