| Code name | RE_03F02 | |||
|---|---|---|---|---|
| Locus | AT4G09960 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | ||||
| sequence |
>RE_03F02_690bp ATGGGAAGAGGAAAGATAGAAATAAAGAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCTGAAGAAAGCCTATG AGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTTTTCTCCACTCGTGGCCGTCTCTATGAATACGCCAATAACAACATAAGATCAACCATTGA GAGGTACAAGAAAGCTTGTTCTGATAGCACCAACACTAGCACTGTCCAAGAAATCAATGCCGCGTACTATCAACAAGAATCTGCTAAGCTGAGACAACAG ATCCAAACGATTCAAAACTCCAACAGGAATCTGATGGGAGACTCTTTGAGTTCCTTAAGTGTCAAGGAACTAAAACAAGTTGAGAATCGCCTTGAGAAAG CTATCTCTAGGATCAGGTCCAAGAAGCATGAGTTGCTTTTAGTTGAAATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGACAATGAGAACATCTATCT AAGAACTAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGCGGTTCAGAGATTAATGCAATTGAAGCTTTAGCCTCACGCAAT TACTTTGCTCATAGCATTATGACTGCTGGTTCTGGATCTGGTAATGGAGGTTCTTACTCTGATCCCGACAAGAAAATTCTTCATCTCGGA >RE_03F02_translated MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQ IQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALASRN YFAHSIMTAGSGSGNGGSYSDPDKKILHLG |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 689/690 (99.9%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G09 ATGGGAAGAGGAAAGATAGAAATAAAGAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCTGAAGAAAGCCTATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGGGAAGAGGAAAGATAGAAATAAAGAGGATAGAGAACTCAACAAATCGACAAGTGACGTTTTGCAAAAGAAGAAATGGACTTCTGAAGAAAGCCTATG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G09 AGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTTTTCTCCACTCGTGGCCGTCTCTATGAATACGCCAATAACAACATAAGATCAACCATTGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGCTTTCGGTCCTTTGCGATGCAGAAGTTGCGCTCATTGTTTTCTCCACTCGTGGCCGTCTCTATGAATACGCCAATAACAACATAAGATCAACCATTGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G09 GAGGTACAAGAAAGCTTGTTCTGATAGCACCAACACTAGCACTGTCCAAGAAATCAATGCCGCGTACTATCAACAAGAATCTGCTAAGCTGAGACAACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GAGGTACAAGAAAGCTTGTTCTGATAGCACCAACACTAGCACTGTCCAAGAAATCAATGCCGCGTACTATCAACAAGAATCTGCTAAGCTGAGACAACAG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G09 ATCCAAACGATTCAAAACTCCAACAGGAATCTGATGGGAGACTCTTTGAGTTCCTTAAGTGTCAAGGAACTAAAACAAGTTGAGAATCGCCTTGAGAAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATCCAAACGATTCAAAACTCCAACAGGAATCTGATGGGAGACTCTTTGAGTTCCTTAAGTGTCAAGGAACTAAAACAAGTTGAGAATCGCCTTGAGAAAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G09 CTATCTCTAGGATCAGGTCCAAGAAGCATGAGTTGCTTTTAGTTGAAATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGACAATGAGAACATCTATCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CTATCTCTAGGATCAGGTCCAAGAAGCATGAGTTGCTTTTAGTTGAAATCGAAAACGCGCAGAAAAGGGAGATTGAGCTTGACAATGAGAACATCTATCT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G09 AAGAACTAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGTGGTTCAGAGATTAATGCAATTGAAGCTTTAGCCTCACGCAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
RE_03F AAGAACTAAGGTAGCAGAAGTGGAGAGGTATCAACAACACCATCATCAAATGGTTAGCGGTTCAGAGATTAATGCAATTGAAGCTTTAGCCTCACGCAAT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690
AT4G09 TACTTTGCTCATAGCATTATGACTGCTGGTTCTGGATCTGGTAATGGAGGTTCTTACTCTGATCCCGACAAGAAAATTCTTCATCTCGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TACTTTGCTCATAGCATTATGACTGCTGGTTCTGGATCTGGTAATGGAGGTTCTTACTCTGATCCCGACAAGAAAATTCTTCATCTCGGA
610 620 630 640 650 660 670 680 690
10 20 30 40 50 60 70 80 90 100
AT4G09 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQ
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G09 IQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALASRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F IQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQHHHQMVSGSEINAIEALASRN
110 120 130 140 150 160 170 180 190 200
210 220 230
AT4G09 YFAHSIMTAGSGSGNGGSYSDPDKKILHLG
::::::::::::::::::::::::::::::
RE_03F YFAHSIMTAGSGSGNGGSYSDPDKKILHLG
210 220 230
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