◆◆◆RE_03F04 detail◆◆◆

Code nameRE_03F04
LocusAT3G42790
Forward primer
Reverse primer
Alignment with TAIR7CDSアミノ酸配列99.60%一致
comment
sequence
>RE_03F04_750bp
ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG
ATGTTCGAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA
AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC
GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA
TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC
AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT
GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC
ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT

>RE_03F04_translated
MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVREFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD
AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC
GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA
Alignment CDS(TAIRver.9)_without_stop_codonとのalignment

749/750 (99.9%)(アミノ酸配列で249/250 (99.6%))一致しました。


               10        20        30        40        50        60        70        80        90       100
AT3G42 ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG
               10        20        30        40        50        60        70        80        90       100

              110       120       130       140       150       160       170       180       190       200
AT3G42 ATGTTCAAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA
       :::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGTTCGAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA
              110       120       130       140       150       160       170       180       190       200

              210       220       230       240       250       260       270       280       290       300
AT3G42 AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC
              210       220       230       240       250       260       270       280       290       300

              310       320       330       340       350       360       370       380       390       400
AT3G42 GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA
              310       320       330       340       350       360       370       380       390       400

              410       420       430       440       450       460       470       480       490       500
AT3G42 TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC
              410       420       430       440       450       460       470       480       490       500

              510       520       530       540       550       560       570       580       590       600
AT3G42 AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT
              510       520       530       540       550       560       570       580       590       600

              610       620       630       640       650       660       670       680       690       700
AT3G42 GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC
              610       620       630       640       650       660       670       680       690       700

              710       720       730       740       750
AT3G42 ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT
              710       720       730       740       750



               10        20        30        40        50        60        70        80        90       100
AT3G42 MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVREFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD
               10        20        30        40        50        60        70        80        90       100

              110       120       130       140       150       160       170       180       190       200
AT3G42 AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC
              110       120       130       140       150       160       170       180       190       200

              210       220       230       240       250
AT3G42 GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA
       ::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA
              210       220       230       240       250


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