| Code name | RE_03F04 | |||
|---|---|---|---|---|
| Locus | AT3G42790 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ||||
| sequence |
>RE_03F04_750bp ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG ATGTTCGAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT >RE_03F04_translated MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVREFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 749/750 (99.9%)（アミノ酸配列で249/250 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G42 ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G42 ATGTTCAAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGTTCGAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G42 AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G42 GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G42 TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G42 AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G42 GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750
AT3G42 ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT
::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT
710 720 730 740 750
10 20 30 40 50 60 70 80 90 100
AT3G42 MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVREFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G42 AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT3G42 GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA
::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA
210 220 230 240 250
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