Code name | RE_03F04 | |||
---|---|---|---|---|
Locus | AT3G42790 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
comment | ||||
sequence |
>RE_03F04_750bp ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG ATGTTCGAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT >RE_03F04_translated MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVREFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 749/750 (99.9%)(アミノ酸配列で249/250 (99.6%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G42 ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G42 ATGTTCAAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F ATGTTCGAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G42 AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F AGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGAC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G42 GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F GCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G42 TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F TATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G42 AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F AGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G42 GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F GGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 AT3G42 ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT :::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F ATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCT 710 720 730 740 750 10 20 30 40 50 60 70 80 90 100 AT3G42 MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVREFYQQCDPEKENLCLYGLPNEEWEVNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSD 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G42 AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F AWLLSVSFYFGSRFSFHKEERKRLFNMINDVPTIFEVVTGMAKAKDKSSAANQNGNKSKSNSKVRTSEGKSSKTKQPKEEDEEIDEDDEDDHGETLCGAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 AT3G42 GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA :::::::::::::::::::::::::::::::::::::::::::::::::: RE_03F GDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARA 210 220 230 240 250 |