| Code name | RE_03F05 | |||
|---|---|---|---|---|
| Locus | AT4G34410 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0112(0314_塩基配列100%一致/0420_塩基配列100%一致) | |||
| sequence |
>RE_03F05_804bp ATGCATTATCCTAACAACAGAACCGAATTCGTCGGAGCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTTATTG TCTCTGCTTTGCAACACGTGATCTCAGGGGAAAACGAAACGGCGCCGTGTCAGGGTTTTTCCAGTGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTT GGATTCAGACACTTGTCAAGTCTGTAGGATCGAAGGATGTCTCGGCTGTAACTACTTTTTCGCGCCAAATCAGAGAATTGAAAAGAATCATCAACAAGAA GAAGAGATTACTAGTAGTAGTAACAGAAGAAGAGAGAGCTCTCCCGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAGAAGA ATGGTTACAGAGGAGTTAGGCAAAGACCTTGGGGAAAATTTGCAGCTGAGACCAGAGATCCTAAAAGAGCCACACGTGTTTGGCTTGGTACTTTCGAAAC CGCCGAAGATGCGGCTCGAGCTTATGATCGAGCCGCGATTGGATTCCGTGGGCCAAGGGCTAAACTCAACTTCCCCTTTGTGGATTACACGTCTTCAGTT TCATCTCCTGTTGCTGCTGATGATATAGGAGCAAAGGCAAGTGCAAGCGCCAGTGTGAGCGCCACAGATTCAGTTGAAGCAGAGCAATGGAACGGAGGAG GAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTTGGGAATGGAGATTCTTCAGATTCAGGAAATACAATTGCTGATATGTT CCAG >RE_03F05_translated MHYPNNRTEFVGAPAPTRYQKEQLSPEQELSVIVSALQHVISGENETAPCQGFSSDSTVISAGMPRLDSDTCQVCRIEGCLGCNYFFAPNQRIEKNHQQE EEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAETRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSV SSPVAADDIGAKASASASVSATDSVEAEQWNGGGGDCNMEEWMNMMMMMDFGNGDSSDSGNTIADMFQ |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 803/804 (99.9%)（アミノ酸配列で267/268 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G34 ATGCATTATCCTAACAACAGAACCGAATTCGTCGGAGCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTTATTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGCATTATCCTAACAACAGAACCGAATTCGTCGGAGCTCCAGCCCCAACCCGGTATCAAAAGGAGCAGTTGTCACCGGAGCAAGAGCTTTCAGTTATTG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G34 TCTCTGCTTTGCAACACGTGATCTCAGGGGAAAACGAAACGGCGCCGTGTCAGGGTTTTTCCAGTGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TCTCTGCTTTGCAACACGTGATCTCAGGGGAAAACGAAACGGCGCCGTGTCAGGGTTTTTCCAGTGACAGCACAGTGATAAGCGCGGGAATGCCTCGGTT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G34 GGATTCAGACACTTGTCAAGTCTGTAGGATCGAAGGATGTCTCGGCTGTAACTACTTTTTCGCGCCAAATCAGAGAATTGAAAAGAATCATCAACAAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GGATTCAGACACTTGTCAAGTCTGTAGGATCGAAGGATGTCTCGGCTGTAACTACTTTTTCGCGCCAAATCAGAGAATTGAAAAGAATCATCAACAAGAA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G34 GAAGAGATTACTAGTAGTAGTAACAGAAGAAGAGAGAGCTCTCCCGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GAAGAGATTACTAGTAGTAGTAACAGAAGAAGAGAGAGCTCTCCCGTGGCGAAGAAAGCGGAAGGTGGCGGGAAAATCAGGAAGAGGAAGAACAAGAAGA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G34 ATGGTTACAGAGGAGTTAGGCAAAGACCTTGGGGAAAATTTGCAGCTGAGATCAGAGATCCTAAAAGAGCCACACGTGTTTGGCTTGGTACTTTCGAAAC
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGGTTACAGAGGAGTTAGGCAAAGACCTTGGGGAAAATTTGCAGCTGAGACCAGAGATCCTAAAAGAGCCACACGTGTTTGGCTTGGTACTTTCGAAAC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G34 CGCCGAAGATGCGGCTCGAGCTTATGATCGAGCCGCGATTGGATTCCGTGGGCCAAGGGCTAAACTCAACTTCCCCTTTGTGGATTACACGTCTTCAGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CGCCGAAGATGCGGCTCGAGCTTATGATCGAGCCGCGATTGGATTCCGTGGGCCAAGGGCTAAACTCAACTTCCCCTTTGTGGATTACACGTCTTCAGTT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G34 TCATCTCCTGTTGCTGCTGATGATATAGGAGCAAAGGCAAGTGCAAGCGCCAGTGTGAGCGCCACAGATTCAGTTGAAGCAGAGCAATGGAACGGAGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TCATCTCCTGTTGCTGCTGATGATATAGGAGCAAAGGCAAGTGCAAGCGCCAGTGTGAGCGCCACAGATTCAGTTGAAGCAGAGCAATGGAACGGAGGAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT4G34 GAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTTGGGAATGGAGATTCTTCAGATTCAGGAAATACAATTGCTGATATGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GAGGGGATTGCAATATGGAGGAGTGGATGAATATGATGATGATGATGGATTTTGGGAATGGAGATTCTTCAGATTCAGGAAATACAATTGCTGATATGTT
710 720 730 740 750 760 770 780 790 800
AT4G34 CCAG
::::
RE_03F CCAG
10 20 30 40 50 60 70 80 90 100
AT4G34 MHYPNNRTEFVGAPAPTRYQKEQLSPEQELSVIVSALQHVISGENETAPCQGFSSDSTVISAGMPRLDSDTCQVCRIEGCLGCNYFFAPNQRIEKNHQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MHYPNNRTEFVGAPAPTRYQKEQLSPEQELSVIVSALQHVISGENETAPCQGFSSDSTVISAGMPRLDSDTCQVCRIEGCLGCNYFFAPNQRIEKNHQQE
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G34 EEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSV
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F EEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAETRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSV
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT4G34 SSPVAADDIGAKASASASVSATDSVEAEQWNGGGGDCNMEEWMNMMMMMDFGNGDSSDSGNTIADMFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F SSPVAADDIGAKASASASVSATDSVEAEQWNGGGGDCNMEEWMNMMMMMDFGNGDSSDSGNTIADMFQ
210 220 230 240 250 260
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