| Code name | RE_03F06 | |||
|---|---|---|---|---|
| Locus | AT3G16500 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0181(0420_塩基配列100%一致) | |||
| sequence |
>RE_03F06_807bp ATGGAAGGTTGTCCAAGAAACAGAGAAATCGGTCCAAAACTTCTTGATTTGAATCCACAAGGAAGGAAATGGTACCAAGAAGACAAGAACAACACAGATC AGGAGAAGAAACTTGAGCTAAGGCTTGGACCACCCGGTGGTGATGAAGAAGATCATTCAGCAATCAAGAAGAAGAACACAGAGATAAGAAACATCAAGAA GGAAACAGAAGACAAATCTTTCCACTGTTTTAATGGCAATCACTTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGAACTGCT CCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAGAATCTAGCGAGCACAAGCTCTTCAAAGCTAGGTAACGAATCCTCTCATGGAGGTC AAATCAACAAGAGTGATGATGGTGAAAAACAAGTTGAAACCAAGAAGGAAGGAATGTTTGTCAAGATCAACATGGATGGTGTTCCTATTGGTCGTAAAGT TGATCTCAATGCTTACAACAGCTACGAACAGCTCTCTTTTGTCGTTGACAAACTCTTCAGAGGTCTACTCGCAGCTCAAAGAGATATCTCTGATGGTCAA GGAGAAGAGAAACCTATCATTGGATTATTAGATGGGAAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTC CATGGCAAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAGATTTCATCTGCCTTGACATTTGGATGCAGTAAGCAAGAGAAGAT GATGCAC >RE_03F06_translated MEGCPRNREIGPKLLDLNPQGRKWYQEDKNNTDQEKKLELRLGPPGGDEEDHSAIKKKNTEIRNIKKETEDKSFHCFNGNHFSPSNKTTSVPHISQKRTA PGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQ GEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEISSALTFGCSKQEKMMH |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 806/807 (99.9%)（アミノ酸配列で268/269 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G16 ATGGAAGGTTGTCCAAGAAACAGAGAAATCGGTCCAAAACTTCTTGATTTGATTCCACAAGGAAGGAAATGGTACCAAGAAGACAAGAACAACACAGATC
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGGAAGGTTGTCCAAGAAACAGAGAAATCGGTCCAAAACTTCTTGATTTGAATCCACAAGGAAGGAAATGGTACCAAGAAGACAAGAACAACACAGATC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G16 AGGAGAAGAAACTTGAGCTAAGGCTTGGACCACCCGGTGGTGATGAAGAAGATCATTCAGCAATCAAGAAGAAGAACACAGAGATAAGAAACATCAAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGGAGAAGAAACTTGAGCTAAGGCTTGGACCACCCGGTGGTGATGAAGAAGATCATTCAGCAATCAAGAAGAAGAACACAGAGATAAGAAACATCAAGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G16 GGAAACAGAAGACAAATCTTTCCACTGTTTTAATGGCAATCACTTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGAACTGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GGAAACAGAAGACAAATCTTTCCACTGTTTTAATGGCAATCACTTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGAACTGCT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G16 CCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAGAATCTAGCGAGCACAAGCTCTTCAAAGCTAGGTAACGAATCCTCTCATGGAGGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAGAATCTAGCGAGCACAAGCTCTTCAAAGCTAGGTAACGAATCCTCTCATGGAGGTC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G16 AAATCAACAAGAGTGATGATGGTGAAAAACAAGTTGAAACCAAGAAGGAAGGAATGTTTGTCAAGATCAACATGGATGGTGTTCCTATTGGTCGTAAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AAATCAACAAGAGTGATGATGGTGAAAAACAAGTTGAAACCAAGAAGGAAGGAATGTTTGTCAAGATCAACATGGATGGTGTTCCTATTGGTCGTAAAGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G16 TGATCTCAATGCTTACAACAGCTACGAACAGCTCTCTTTTGTCGTTGACAAACTCTTCAGAGGTCTACTCGCAGCTCAAAGAGATATCTCTGATGGTCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TGATCTCAATGCTTACAACAGCTACGAACAGCTCTCTTTTGTCGTTGACAAACTCTTCAGAGGTCTACTCGCAGCTCAAAGAGATATCTCTGATGGTCAA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G16 GGAGAAGAGAAACCTATCATTGGATTATTAGATGGGAAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GGAGAAGAGAAACCTATCATTGGATTATTAGATGGGAAAGGAGAATTTACTTTAACCTATGAAGACAATGAAGGGGACAAGATGCTTGTTGGGGATGTTC
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT3G16 CATGGCAAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAGATTTCATCTGCCTTGACATTTGGATGCAGTAAGCAAGAGAAGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CATGGCAAATGTTTGTTTCATCTGTGAAGAGACTGCGTGTGATTAAAAGCTCTGAGATTTCATCTGCCTTGACATTTGGATGCAGTAAGCAAGAGAAGAT
710 720 730 740 750 760 770 780 790 800
AT3G16 GATGCAC
:::::::
RE_03F GATGCAC
10 20 30 40 50 60 70 80 90 100
AT3G16 MEGCPRNREIGPKLLDLIPQGRKWYQEDKNNTDQEKKLELRLGPPGGDEEDHSAIKKKNTEIRNIKKETEDKSFHCFNGNHFSPSNKTTSVPHISQKRTA
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MEGCPRNREIGPKLLDLNPQGRKWYQEDKNNTDQEKKLELRLGPPGGDEEDHSAIKKKNTEIRNIKKETEDKSFHCFNGNHFSPSNKTTSVPHISQKRTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G16 PGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F PGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQ
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT3G16 GEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEISSALTFGCSKQEKMMH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEISSALTFGCSKQEKMMH
210 220 230 240 250 260
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