| Code name | RE_03F07 | |||
|---|---|---|---|---|
| Locus | AT1G35460 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0210(0229_塩基配列100%一致) | |||
| sequence |
>RE_03F07_777bp ATGCAATCCACTCATATAAGCGGCGGAAGTAGCGGTGGTGGTGGTGGAGGAGGAGGAGAGGTGAGTCGAAGTGGATTATCTCGGATCCGTTCAGCTCCAG CTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCTAACCTTTGTTTAACAGAGCTGCTTACTGGTAATAATAACTCTGGAGG AGTGATAACGAGTCGTGACGACTCGTTCGAGTTCCTGAGTTCTGTTGAGCAAGGATTGTATAATCATCATCAAGGTGGTGGCTTTCACCGTCAGAATAGT TCTCCGGCTGATTTTCTTAGTGGGTCTGGTTCTGGGACTGATAGGTATTTCTCTAATTTTGGTATTCCGGCGAATTATGACTATTTGTCGACCAACGTTG ATATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTCAGCTGAAAGAAGAGCAAATGAGTGGTGGGATATCAGGAATGATGGATAT GAACATGGACAAGATTTTTGAGGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCTACTCATCCTCGTAGCATTGCTGAACGGGTGAGAAGA ACGCGAATAAGTGATCGGATTAGGAGGCTGCAAGAGCTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTGTGGAGTATG TGAAGGCTCTTCAAAGCCAGATCCAGGAATTGACAGAGCAGCAGAAGAGATGCAAATGCAAACCTAAAGAAGAACAA >RE_03F07_translated MQSTHISGGSSGGGGGGGGEVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQGGGFHRQNS SPADFLSGSGSGTDRYFSNFGIPANYDYLSTNVDISPTKRSRDMETQFSSQLKEEQMSGGISGMMDMNMDKIFEDSVPCRVRAKRGCATHPRSIAERVRR TRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKCKPKEEQ |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 776/777 (99.9%)（アミノ酸配列で258/259 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G35 ATGCAATCCACTCATATAAGCGGCGGAAGTAGCGGTGGTGGTGGTGGAGGAGGAGGAGAGGTGAGTCGAAGTGGATTATCTCGGATCCGTTCAGCTCCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGCAATCCACTCATATAAGCGGCGGAAGTAGCGGTGGTGGTGGTGGAGGAGGAGGAGAGGTGAGTCGAAGTGGATTATCTCGGATCCGTTCAGCTCCAG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G35 CTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCTAACCTTTGTTTAACAGAGCTGCTTACTGGTAATAATAACTCTGGAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CTACTTGGATTGAAACCCTACTCGAAGAAGATGAAGAAGAAGGTTTAAAACCTAACCTTTGTTTAACAGAGCTGCTTACTGGTAATAATAACTCTGGAGG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G35 AGTGATAACGAGTCGTGACGACTCGTTCGAGTTCCTGAGTTCTGTTGAGCAAGGATTGTATAATCATCATCAAGGTGGTGGCTTTCACCGTCAGAATAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGTGATAACGAGTCGTGACGACTCGTTCGAGTTCCTGAGTTCTGTTGAGCAAGGATTGTATAATCATCATCAAGGTGGTGGCTTTCACCGTCAGAATAGT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G35 TCTCCGGCTGATTTTCTTAGTGGGTCTGGTTCTGGGACTGATGGGTATTTCTCTAATTTTGGTATTCCGGCGAATTATGACTATTTGTCGACCAACGTTG
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TCTCCGGCTGATTTTCTTAGTGGGTCTGGTTCTGGGACTGATAGGTATTTCTCTAATTTTGGTATTCCGGCGAATTATGACTATTTGTCGACCAACGTTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G35 ATATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTCAGCTGAAAGAAGAGCAAATGAGTGGTGGGATATCAGGAATGATGGATAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATATTTCTCCGACTAAACGGTCTAGAGATATGGAAACACAGTTTTCTTCTCAGCTGAAAGAAGAGCAAATGAGTGGTGGGATATCAGGAATGATGGATAT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G35 GAACATGGACAAGATTTTTGAGGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCTACTCATCCTCGTAGCATTGCTGAACGGGTGAGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GAACATGGACAAGATTTTTGAGGATTCAGTTCCTTGTAGGGTTCGTGCTAAACGTGGTTGTGCTACTCATCCTCGTAGCATTGCTGAACGGGTGAGAAGA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G35 ACGCGAATAAGTGATCGGATTAGGAGGCTGCAAGAGCTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTGTGGAGTATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ACGCGAATAAGTGATCGGATTAGGAGGCTGCAAGAGCTTGTTCCTAACATGGATAAGCAAACCAACACTGCAGACATGTTGGAAGAAGCTGTGGAGTATG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770
AT1G35 TGAAGGCTCTTCAAAGCCAGATCCAGGAATTGACAGAGCAGCAGAAGAGATGCAAATGCAAACCTAAAGAAGAACAA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TGAAGGCTCTTCAAAGCCAGATCCAGGAATTGACAGAGCAGCAGAAGAGATGCAAATGCAAACCTAAAGAAGAACAA
710 720 730 740 750 760 770
10 20 30 40 50 60 70 80 90 100
AT1G35 MQSTHISGGSSGGGGGGGGEVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQGGGFHRQNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MQSTHISGGSSGGGGGGGGEVSRSGLSRIRSAPATWIETLLEEDEEEGLKPNLCLTELLTGNNNSGGVITSRDDSFEFLSSVEQGLYNHHQGGGFHRQNS
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G35 SPADFLSGSGSGTDGYFSNFGIPANYDYLSTNVDISPTKRSRDMETQFSSQLKEEQMSGGISGMMDMNMDKIFEDSVPCRVRAKRGCATHPRSIAERVRR
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F SPADFLSGSGSGTDRYFSNFGIPANYDYLSTNVDISPTKRSRDMETQFSSQLKEEQMSGGISGMMDMNMDKIFEDSVPCRVRAKRGCATHPRSIAERVRR
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT1G35 TRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKCKPKEEQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKCKPKEEQ
210 220 230 240 250
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