| Code name | RE_03F10 | |||
|---|---|---|---|---|
| Locus | AT3G19860 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0241(0314_塩基配列100%一致/0420_塩基配列100%一致) | |||
| sequence |
>RE_03F10_852bp ATGGACGTTTCTGCTAGAAAGTCACAAAAAGCTGGGCGCGAAAAGTTGAGGAGGGAAAAACTGAATGAGCATTTTGTTGAACTGGGAAATGTACTCGATC CAGAGAGACCCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACATCTGAAGTCAACAAACTGAAATCTGAGTACAC CGCATTGACAGATGAGTCCCGCGAGTTGACACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGATATAGAGAATCTCAATCTTCAA TACCATCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATCACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCTATGCCTATTG CTATGCCTCCCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACCCTAGCATGATCCCAGCTCCATGTCCTACATA CATGCCCTACATGCCTCCTAATACAGTCGTTGAGCAACAATCCGTGCACATTCCACAGAACCCCGGTAACCGTTCTCGGGAACCTAGAGCAAAGGTTTCA AGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACACAACTCGAATTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAA GGCCAGAGAAGACAAAGAGATGTAAGAGAAACAACAACAACAACTCAATAGAAGAAAGCTCTCATTCTAGCAAGTGTTCATCTTCTCCGAGCGTACGAGA CCACAGTTCTTCCAGTAGCGTAGCTGGTGGCCAAAAACCTGATGATGCAAAA >RE_03F10_translated MDVSARKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ YHQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMPYMPPNTVVEQQSVHIPQNPGNRSREPRAKVS RESRSEKAEDSNEVATQLELKTPGSTSDKDTLQRPEKTKRCKRNNNNNSIEESSHSSKCSSSPSVRDHSSSSSVAGGQKPDDAK |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 851/852 (99.9%)（アミノ酸配列で283/284 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G19 ATGGACGTTTCTGCTAGAAAGTCACAAAAAGCTGGGCGCGAAAAGTTGAGGAGGGAAAAACTGAATGAGCATTTTGTTGAACTGGGAAATGTACTCGATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGGACGTTTCTGCTAGAAAGTCACAAAAAGCTGGGCGCGAAAAGTTGAGGAGGGAAAAACTGAATGAGCATTTTGTTGAACTGGGAAATGTACTCGATC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G19 CAGAGAGACCCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACATCTGAAGTCAACAAACTGAAATCTGAGTACAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CAGAGAGACCCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACATCTGAAGTCAACAAACTGAAATCTGAGTACAC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G19 CGCATTGACAGATGAGTCCCGCGAGTTGACACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGATATAGAGAATCTCAATCTTCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CGCATTGACAGATGAGTCCCGCGAGTTGACACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGATATAGAGAATCTCAATCTTCAA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G19 TACCAGCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATCACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCTATGCCTATTG
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TACCATCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATCACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCTATGCCTATTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G19 CTATGCCTCCCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACCCTAGCATGATCCCAGCTCCATGTCCTACATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CTATGCCTCCCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACCCTAGCATGATCCCAGCTCCATGTCCTACATA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G19 CATGCCCTACATGCCTCCTAATACAGTCGTTGAGCAACAATCCGTGCACATTCCACAGAACCCCGGTAACCGTTCTCGGGAACCTAGAGCAAAGGTTTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CATGCCCTACATGCCTCCTAATACAGTCGTTGAGCAACAATCCGTGCACATTCCACAGAACCCCGGTAACCGTTCTCGGGAACCTAGAGCAAAGGTTTCA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G19 AGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACACAACTCGAATTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F AGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACACAACTCGAATTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT3G19 GGCCAGAGAAGACAAAGAGATGTAAGAGAAACAACAACAACAACTCAATAGAAGAAAGCTCTCATTCTAGCAAGTGTTCATCTTCTCCGAGCGTACGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GGCCAGAGAAGACAAAGAGATGTAAGAGAAACAACAACAACAACTCAATAGAAGAAAGCTCTCATTCTAGCAAGTGTTCATCTTCTCCGAGCGTACGAGA
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850
AT3G19 CCACAGTTCTTCCAGTAGCGTAGCTGGTGGCCAAAAACCTGATGATGCAAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CCACAGTTCTTCCAGTAGCGTAGCTGGTGGCCAAAAACCTGATGATGCAAAA
810 820 830 840 850
10 20 30 40 50 60 70 80 90 100
AT3G19 MDVSARKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MDVSARKSQKAGREKLRREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQ
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G19 YQQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMPYMPPNTVVEQQSVHIPQNPGNRSREPRAKVS
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F YHQRLRSMSPWGAAMDHTVMMAPPPSFPYPMPIAMPPGSIPMHPSMPSYTYFGNQNPSMIPAPCPTYMPYMPPNTVVEQQSVHIPQNPGNRSREPRAKVS
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT3G19 RESRSEKAEDSNEVATQLELKTPGSTSDKDTLQRPEKTKRCKRNNNNNSIEESSHSSKCSSSPSVRDHSSSSSVAGGQKPDDAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F RESRSEKAEDSNEVATQLELKTPGSTSDKDTLQRPEKTKRCKRNNNNNSIEESSHSSKCSSSPSVRDHSSSSSVAGGQKPDDAK
210 220 230 240 250 260 270 280
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