| Code name | RE_03F11 | |||
|---|---|---|---|---|
| Locus | AT4G09180 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0262(0314_塩基配列100%一致/0420_塩基配列100%一致) | |||
| sequence |
>RE_03F11_786bp ATGCAACCAACATCCGTCGGTAGTAGCGGCGGTGGTGACGACGGAGGAGGCAGAGGAGGAGGAGGAGGGCTAAGTAGAAGTGGACTATCTCGGATCCGTT CAGCTCCAGCGACTTGGCTTGAAGCTTTACCTGAGGAAGATGAAGAAGAGTCTTTGAAACCTAATCTTGGTCTCACCGATTTGCTTACCGGGAACTCGAA CGATTTACCGACAAGTCGCGGCTCGTTCGAGTTCCCGATTCCTGTTGAGCAAGGGTTGTATCAACAAGGTGGGTTTCACCGACAGAATAGTACTCCGGCG GATTTTCTTAGTGGTTCTGATGGATTTATCCAAAGCTTTGGGATTCAGGCGAATTACGATTACTTATCGGGGAATATCGATGTTTCTCCGGGAAGTAAGC GGTCTAGAGAAATGGAAGCACTCTTCTCTTCTCCTGAGTTTACTTCTCAAATGAAAGGAGAGCAAAGCAGCGGTCAAGTTCCTACCGGAGTATCAAGCAT GTCGGATATGAACATGGAGAACCTTATGGAGGACTCTGTTGCTTTTAGGGTTCGGGCTAAACGTGGTTGCGCAACTCATCCCCGCAGCATTGCCGAGAGG GTACGAAGGACGCGGATTAGTGATCGGATAAGGAAGCTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGAAGAAGCAG TAGAATACGTGAAAGTTCTTCAAAGGCAGATCCAGGAGTTAACAGAAGAACAGAAGAGGTGCACATGCATACCTAAGGAAGAACAA >RE_03F11_translated MQPTSVGSSGGGDDGGGRGGGGGLSRSGLSRIRSAPATWLEALPEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGLYQQGGFHRQNSTPA DFLSGSDGFIQSFGIQANYDYLSGNIDVSPGSKRSREMEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAER VRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKEEQ |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 785/786 (99.9%)（アミノ酸配列で261/262 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G09 ATGCAACCAACATCCGTCGGTAGTAGCGGCGGTGGTGACGACGGAGGAGGCAGAGGAGGAGGAGGAGGGCTAAGTAGAAGTGGACTATCTCGGATCCGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F ATGCAACCAACATCCGTCGGTAGTAGCGGCGGTGGTGACGACGGAGGAGGCAGAGGAGGAGGAGGAGGGCTAAGTAGAAGTGGACTATCTCGGATCCGTT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G09 CAGCTCCAGCGACTTGGCTTGAAGCTTTACTTGAGGAAGATGAAGAAGAGTCTTTGAAACCTAATCTTGGTCTCACCGATTTGCTTACCGGGAACTCGAA
:::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CAGCTCCAGCGACTTGGCTTGAAGCTTTACCTGAGGAAGATGAAGAAGAGTCTTTGAAACCTAATCTTGGTCTCACCGATTTGCTTACCGGGAACTCGAA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G09 CGATTTACCGACAAGTCGCGGCTCGTTCGAGTTCCCGATTCCTGTTGAGCAAGGGTTGTATCAACAAGGTGGGTTTCACCGACAGAATAGTACTCCGGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F CGATTTACCGACAAGTCGCGGCTCGTTCGAGTTCCCGATTCCTGTTGAGCAAGGGTTGTATCAACAAGGTGGGTTTCACCGACAGAATAGTACTCCGGCG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G09 GATTTTCTTAGTGGTTCTGATGGATTTATCCAAAGCTTTGGGATTCAGGCGAATTACGATTACTTATCGGGGAATATCGATGTTTCTCCGGGAAGTAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GATTTTCTTAGTGGTTCTGATGGATTTATCCAAAGCTTTGGGATTCAGGCGAATTACGATTACTTATCGGGGAATATCGATGTTTCTCCGGGAAGTAAGC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G09 GGTCTAGAGAAATGGAAGCACTCTTCTCTTCTCCTGAGTTTACTTCTCAAATGAAAGGAGAGCAAAGCAGCGGTCAAGTTCCTACCGGAGTATCAAGCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GGTCTAGAGAAATGGAAGCACTCTTCTCTTCTCCTGAGTTTACTTCTCAAATGAAAGGAGAGCAAAGCAGCGGTCAAGTTCCTACCGGAGTATCAAGCAT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G09 GTCGGATATGAACATGGAGAACCTTATGGAGGACTCTGTTGCTTTTAGGGTTCGGGCTAAACGTGGTTGCGCAACTCATCCCCGCAGCATTGCCGAGAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GTCGGATATGAACATGGAGAACCTTATGGAGGACTCTGTTGCTTTTAGGGTTCGGGCTAAACGTGGTTGCGCAACTCATCCCCGCAGCATTGCCGAGAGG
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G09 GTACGAAGGACGCGGATTAGTGATCGGATAAGGAAGCTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGAAGAAGCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F GTACGAAGGACGCGGATTAGTGATCGGATAAGGAAGCTACAAGAGCTTGTACCTAACATGGACAAGCAAACCAACACTGCAGACATGTTAGAAGAAGCAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780
AT4G09 TAGAATACGTGAAAGTTCTTCAAAGGCAGATCCAGGAGTTAACAGAAGAACAGAAGAGGTGCACATGCATACCTAAGGAAGAACAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F TAGAATACGTGAAAGTTCTTCAAAGGCAGATCCAGGAGTTAACAGAAGAACAGAAGAGGTGCACATGCATACCTAAGGAAGAACAA
710 720 730 740 750 760 770 780
10 20 30 40 50 60 70 80 90 100
AT4G09 MQPTSVGSSGGGDDGGGRGGGGGLSRSGLSRIRSAPATWLEALLEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGLYQQGGFHRQNSTPA
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F MQPTSVGSSGGGDDGGGRGGGGGLSRSGLSRIRSAPATWLEALPEEDEEESLKPNLGLTDLLTGNSNDLPTSRGSFEFPIPVEQGLYQQGGFHRQNSTPA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G09 DFLSGSDGFIQSFGIQANYDYLSGNIDVSPGSKRSREMEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F DFLSGSDGFIQSFGIQANYDYLSGNIDVSPGSKRSREMEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDMNMENLMEDSVAFRVRAKRGCATHPRSIAER
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260
AT4G09 VRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03F VRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTCIPKEEQ
210 220 230 240 250 260
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