| Code name | RE_03G02 | |||
|---|---|---|---|---|
| Locus | AT5G62610 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | ->RE_0294(0314_塩基配列100%一致/0420_塩基配列100%一致) | |||
| sequence |
>RE_03G02_843bp ATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTTCTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTC GCTCTGGTCTCCGTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACGTCTCCGCGGCTGAGGAATCTACAGTCAC CGATCTAACTGCTGGCTGGGGAAGTAGAAAGACTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTAATGAATTG AAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATGGAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTG GAAGCAAAGCAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAAGAGGACAAGCTACTGACCGGCATAGTTTAGC AGAGCGAGCTAGAAGAGAAAAGATCAGTGAGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCCTTGTGCTCGAT GAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTATCAATGGAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAG GAGTTTTTCCTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAGAAGCTAATGAAACCCGAGTATCTCAACCGGA GTGGCTCCATATGCAGGTTGATGGGAACTTTAACCGAACCACA >RE_03G02_translated MDPPLVNDSSFSAANPSSYTLSEIWPFPVNDAVRSGLRLAVNSGRVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNEL KESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLD EIINYIQSLQRQVEFLSMELEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEANETRVSQPEWLHMQVDGNFNRTT |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 842/843 (99.9%)（アミノ酸配列で280/281 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G62 ATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTTCTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G ATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTTCTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G62 GCTCTGGTCTCCGTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACGTCTCCGCGGCTGAGGAATCTACAGTCAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G GCTCTGGTCTCCGTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACGTCTCCGCGGCTGAGGAATCTACAGTCAC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G62 CGATCTAACTGCTGGCTGGGGAAGTAGAAAGACTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTAATGAATTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G CGATCTAACTGCTGGCTGGGGAAGTAGAAAGACTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTAATGAATTG
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G62 AAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATGGAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATGGAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G62 GAAGCAAAGCAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAAGAGGACAAGCTACTGACCGGCATAGTTTAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G GAAGCAAAGCAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAAGAGGACAAGCTACTGACCGGCATAGTTTAGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G62 AGAGCGAGCTAGAAGAGAAAAGATCAGTGAGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCCTTGTGCTCGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G AGAGCGAGCTAGAAGAGAAAAGATCAGTGAGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCCTTGTGCTCGAT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G62 GAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTATCAATGAAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_03G GAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTATCAATGGAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G62 GAGTTTTTCCTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAGAAGCTAATGAAACCCGAGTATCTCAACCGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G GAGTTTTTCCTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAGAAGCTAATGAAACCCGAGTATCTCAACCGGA
710 720 730 740 750 760 770 780 790 800
810 820 830 840
AT5G62 GTGGCTCCATATGCAGGTTGATGGGAACTTTAACCGAACCACA
:::::::::::::::::::::::::::::::::::::::::::
RE_03G GTGGCTCCATATGCAGGTTGATGGGAACTTTAACCGAACCACA
810 820 830 840
10 20 30 40 50 60 70 80 90 100
AT5G62 MDPPLVNDSSFSAANPSSYTLSEIWPFPVNDAVRSGLRLAVNSGRVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G MDPPLVNDSSFSAANPSSYTLSEIWPFPVNDAVRSGLRLAVNSGRVFTRSEHSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNEL
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G62 KESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G KESGDKKRKLCGSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLD
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280
AT5G62 EIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEANETRVSQPEWLHMQVDGNFNRTT
::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_03G EIINYIQSLQRQVEFLSMELEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEANETRVSQPEWLHMQVDGNFNRTT
210 220 230 240 250 260 270 280
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