Code name | RE_03G03 | |||
---|---|---|---|---|
Locus | AT5G44080 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.70%一致 | |||
comment | ->RE_0371(0314_アミノ酸配列100%一致/0420_アミノ酸配列100%一致) | |||
sequence |
>RE_03G03_945bp ATGACGTCGTTTCAGGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGTCGCATCTCTTCTGCTTCTACTTCTTCTTCGTCTATAAGACCTC AACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGGAAGAAACGACGGATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTCTTAGATGCGTCGATAAATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACA ACGACGGCTTCTGATGTTGTGGATCACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGTTTTGGAGAGAGATGGTATCAGGAGAAG GTAAAGGGATGAAGGAAGAGACGTCGGAAGAGATAATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGCGTCGGC GGAGGATTTGGATGTGAAGATTCCGGTGACGAATTACGGATTCGATCATTCTGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCA ATAGTTGCGTTTGGGAATGGTTTAGATGTTTACGGAGGAGGAGCTAGAGGGAAGAGAGCGAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGA GACAGAGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGAAGCTTTGGCTGCGAAGCTTGA GGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAAGAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAAG CAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGG >RE_03G03_translated MTSFQVMRSSNSRNSDLSRRISSASTSSSSIRPQQQFRRDLTSVGYGGRNDGLYSSNSMTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITT TTASDVVDHGGGTETTRGGKSVDEFWREMVSGEGKGMKEETSEEIMTLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGS IVAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQKLMEFVIPVVEKPK QQPPRFLRRIRSLEW |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 944/945 (99.9%)(アミノ酸配列で314/315 (99.7%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G44 ATGACGTCGTTTCAGGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGTCGCATCTCTTCTGCTTCTACTTCTTCTTCGTCTATAAGACCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G ATGACGTCGTTTCAGGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGTCGCATCTCTTCTGCTTCTACTTCTTCTTCGTCTATAAGACCTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G44 AACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGGAAGAAACGACGGATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G AACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGGAAGAAACGACGGATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G44 TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTCTTAGATGCGTCGATAAATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G TACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTCTTAGATGCGTCGATAAATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G44 ACGACGGCTTCTGATGTTGTGGATCACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGATTTGGAGAGAGATGGTATCAGGAGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: RE_03G ACGACGGCTTCTGATGTTGTGGATCACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGTTTTGGAGAGAGATGGTATCAGGAGAAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G44 GTAAAGGGATGAAGGAAGAGACGTCGGAAGAGATAATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGCGTCGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G GTAAAGGGATGAAGGAAGAGACGTCGGAAGAGATAATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGCGTCGGC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G44 GGAGGATTTGGATGTGAAGATTCCGGTGACGAATTACGGATTCGATCATTCTGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G GGAGGATTTGGATGTGAAGATTCCGGTGACGAATTACGGATTCGATCATTCTGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G44 ATAGTTGCGTTTGGGAATGGTTTAGATGTTTACGGAGGAGGAGCTAGAGGGAAGAGAGCGAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G ATAGTTGCGTTTGGGAATGGTTTAGATGTTTACGGAGGAGGAGCTAGAGGGAAGAGAGCGAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G44 GACAGAGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGAAGCTTTGGCTGCGAAGCTTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G GACAGAGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGAAGCTTTGGCTGCGAAGCTTGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G44 GGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAAGAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G GGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAAGAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAAG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 AT5G44 CAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGG ::::::::::::::::::::::::::::::::::::::::::::: RE_03G CAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGG 910 920 930 940 10 20 30 40 50 60 70 80 90 100 AT5G44 MTSFQVMRSSNSRNSDLSRRISSASTSSSSIRPQQQFRRDLTSVGYGGRNDGLYSSNSMTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G MTSFQVMRSSNSRNSDLSRRISSASTSSSSIRPQQQFRRDLTSVGYGGRNDGLYSSNSMTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G44 TTASDVVDHGGGTETTRGGKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGS :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G TTASDVVDHGGGTETTRGGKSVDEFWREMVSGEGKGMKEETSEEIMTLEDFLAKAAVEDETAVTASAEDLDVKIPVTNYGFDHSAPPHNPFQMIDKVEGS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G44 IVAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQKLMEFVIPVVEKPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_03G IVAFGNGLDVYGGGARGKRARVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDKRKERYQKLMEFVIPVVEKPK 210 220 230 240 250 260 270 280 290 300 310 AT5G44 QQPPRFLRRIRSLEW ::::::::::::::: RE_03G QQPPRFLRRIRSLEW 310 |